Function and Biology

JC Polyomavirus genotype 3 VP1 in complex with GD1a oligosaccharide

Source organism: JC polyomavirus type 3
Biochemical function: structural molecule activity
Biological process: not assigned
Cellular component: viral capsid

GO terms

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Sequence family

Pfam Protein family (Pfam)
PF00718
Domain description: Polyomavirus coat protein
Occurring in:
  1. Capsid protein VP1
The deposited structure of PDB entry 4x11 contains 5 copies of Pfam domain PF00718 (Polyomavirus coat protein) in Capsid protein VP1. Showing 1 copy in chain B [auth E].

InterPro InterPro annotations
IPR011222
Domain description: Double-stranded DNA virus, group I, capsid
Occurring in:
  1. Capsid protein VP1
IPR000662
Domain description: Capsid protein VP1,Polyomavirus
Occurring in:
  1. Capsid protein VP1
IPR036931
Domain description: Polyomavirus capsid protein VP1 superfamily
Occurring in:
  1. Capsid protein VP1

Structure domain

CATH CATH domain
2.60.175.10
Class: Mainly Beta
Architecture: Sandwich
Topology: Polyomavirus Vp1; Chain A
Homology: Capsid protein VP1,Polyomavirus
Occurring in:
  1. Capsid protein VP1
The deposited structure of PDB entry 4x11 contains 5 copies of CATH domain 2.60.175.10 (Polyomavirus Vp1; Chain A) in Capsid protein VP1. Showing 1 copy in chain B [auth E].