X-ray diffraction
2.3Å resolution

JC Polyomavirus genotype 3 VP1 in complex with GD1a oligosaccharide


Function and Biology Details

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
Entry contents:
1 distinct polypeptide molecule
Capsid protein VP1 Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 272 amino acids
Theoretical weight: 30.03 KDa
Source organism: JC polyomavirus type 3
Expression system: Escherichia coli BL21(DE3)
  • Canonical: P90498 (Residues: 23-290; Coverage: 76%)
Gene name: VP1
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: C2
Unit cell:
a: 150.14Å b: 96.1Å c: 127.95Å
α: 90° β: 110.18° γ: 90°
R R work R free
0.163 0.161 0.201
Expression system: Escherichia coli BL21(DE3)