4u62

X-ray diffraction
1.55Å resolution

Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with 3'-sialyllactose

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122821 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein VP1 Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 280 amino acids
Theoretical weight: 30.99 KDa
Source organism: Trichodysplasia spinulosa-associated polyomavirus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: E2ESL7 (Residues: 31-304; Coverage: 73%)
Gene name: VP1
Sequence domains: Polyomavirus coat protein
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P21
Unit cell:
a: 66.24Å b: 152.84Å c: 147.24Å
α: 90° β: 92.34° γ: 90°
R-values:
R R work R free
0.157 0.155 0.18
Expression system: Escherichia coli BL21(DE3)