› 4tna

X-ray diffraction
2.5Å resolution

FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE

Released:
DOI: 10.2210/pdb4tna/pdb
PDB entry 4tna coloured by chain, front view.
PDB entry 4tna coloured by chain, side view.
PDB entry 4tna coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Further refinement of the structure of yeast tRNAPhe.
Hingerty B, Brown RS, Jack A
J Mol Biol 124 523-34 (1978)
PMID: 361973

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195823 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
TRNAPHE Chain: A
Molecule details ›
Chain: A
Length: 76 nucleotides
Theoretical weight: 24.89 KDa
Source organism: Saccharomyces cerevisiae
Sequence domains: tRNA

Ligands and Environments

1 bound ligand:
Ligand MG 4 x MG
11 modified residues:
Ligand 2MG 1 x 2MG
Ligand H2U 2 x H2U
Ligand M2G 1 x M2G
Ligand OMC 1 x OMC
Ligand OMG 1 x OMG
Ligand YG 1 x YG
Ligand PSU 2 x PSU
Ligand 5MC 2 x 5MC
Ligand 7MG 1 x 7MG
Ligand 5MU 1 x 5MU
Ligand 1MA 1 x 1MA

Experiments and Validation Details

Entry percentile scores
Spacegroup: P21
Unit cell:
a: 56.3Å b: 33.4Å c: 63Å
α: 90° β: 90.25° γ: 90°

Quick links

Citations

13 review citations

On the role of magnesium ions in RNA stability.
Misra et al. (1998)
12 more

23 mentions without citation

Transfer RNA modifications: nature's combinatorial chemistry playground.
Jackman et al. (2013)
22 more