› 4rya

X-ray diffraction
1.5Å resolution

Crystal structure of abc transporter solute binding protein AVI_3567 from AGROBACTERIUM VITIS S4, TARGET EFI-510645, with bound D-mannitol

Released:
DOI: 10.2210/pdb4rya/pdb
PDB 4rya coloured by chain and viewed from the front.
PDB 4rya coloured by chain and viewed from the side.
PDB 4rya coloured by chain and viewed from the top.
Source organism: Agrobacterium vitis S4
Entry authors: Patskovsky Y, Toro R, Bhosle R, Al Obaidi N, Morisco LL, Wasserman SR, Chamala S, Attonito JD, Scott Glenn A, Chowdhury S, Lafleur J, Hillerich B, Siedel RD, Love J, Whalen KL, Gerlt JA, Almo SC, Enzyme Function Initiative (EFI)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
ABC transporter substrate binding protein (Sorbitol) Chain: A
Molecule details ›
Chain: A
Length: 424 amino acids
Theoretical weight: 46.65 KDa
Source organism: Agrobacterium vitis S4
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: B9JRF8 (Residues: 18-439; Coverage: 100%)
Gene name: Avi_3567
Sequence domains: Bacterial extracellular solute-binding protein
Structure domains: Periplasmic binding protein-like II

Ligands and Environments

2 bound ligands:
Ligand MTL 1 x MTL
Ligand ACT 1 x ACT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P21
Unit cell:
a: 59.413Å b: 61.256Å c: 65.501Å
α: 90° β: 104.01° γ: 90°
R-values:
R R work R free
0.133 0.132 0.168
Expression system: Escherichia coli BL21(DE3)

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