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Crystal structure of human ALKBH7 in complex with alpha-ketoglutarate and Mn(II)

X-ray diffraction
1.35Å resolution
PDB 4qkd coloured by chain and viewed from the front.
PDB 4qkd coloured by chain and viewed from the side.
PDB 4qkd coloured by chain and viewed from the top.
Source organism: Homo sapiens
Assemblies composition:
monomeric (preferred)
homo trimer
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1
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Multimeric state: monomeric

Binding statistics and energies are not available for this assembly
Assembly 2 (preferred)
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Multimeric state: monomeric

Binding statistics and energies are not available for this assembly
Assembly 3
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Multimeric state: monomeric

Binding statistics and energies are not available for this assembly
Assembly 4
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Multimeric state: homo trimer

Binding statistics and energies are not available for this assembly

Macromolecules

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial
Chains: A, B, C
Length: 200 amino acids
Theoretical weight: 22.59 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9BT30 (Residues: 17-215; Coverage: 90%)
Gene names: ABH7, ALKBH7, SPATA11, UNQ6002/PRO34564
Pfam: 2OG-Fe(II) oxygenase superfamily
InterPro:
CATH: Alpha-ketoglutarate-dependent dioxygenase AlkB-like
PDB 4qkd contains 1 copy of Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial in assembly 2. This protein is highlighted and viewed from the front.
PDB 4qkd contains 1 copy of Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial in assembly 2. This protein is highlighted and viewed from the side.
PDB 4qkd contains 1 copy of Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial in assembly 2. This protein is highlighted and viewed from the top.
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