4q4y

X-ray diffraction
1.88Å resolution

Crystal structure of Coxsackievirus A24v soaked with Disialyllacto-N-tetraose (DSLNT)

Released:
Source organism: Coxsackievirus A24

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
Selective cleavage of Tyr-|-Gly bond in picornavirus polyprotein.
NTP + H(2)O = NDP + phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero 240-mer (preferred)
PDBe Complex ID:
PDB-CPX-197697 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
Coxsackievirus capsid protein VP1 Chain: 1
Molecule details ›
Chain: 1
Length: 305 amino acids
Theoretical weight: 34.38 KDa
Source organism: Coxsackievirus A24
UniProt:
  • Canonical: V9VEF3 (Residues: 581-885; Coverage: 14%)
Sequence domains: picornavirus capsid protein
Structure domains: Jelly Rolls
Coxsackievirus capsid protein VP2 Chain: 2
Molecule details ›
Chain: 2
Length: 271 amino acids
Theoretical weight: 29.82 KDa
Source organism: Coxsackievirus A24
UniProt:
  • Canonical: V9VEF3 (Residues: 70-340; Coverage: 12%)
Sequence domains: picornavirus capsid protein
Structure domains: Jelly Rolls
Coxsackievirus capsid protein VP3 Chain: 3
Molecule details ›
Chain: 3
Length: 240 amino acids
Theoretical weight: 26.64 KDa
Source organism: Coxsackievirus A24
UniProt:
  • Canonical: V9VEF3 (Residues: 341-580; Coverage: 11%)
Sequence domains: picornavirus capsid protein
Structure domains: Jelly Rolls
Coxsackievirus capsid protein VP4 Chain: 4
Molecule details ›
Chain: 4
Length: 69 amino acids
Theoretical weight: 7.32 KDa
Source organism: Coxsackievirus A24
UniProt:
  • Canonical: V9VEF3 (Residues: 1-69; Coverage: 3%)
Sequence domains: Picornavirus coat protein (VP4)
Structure domains: Picornavirus coat protein VP4

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: I222
Unit cell:
a: 304.479Å b: 365.298Å c: 366.488Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.157 0.157 not available