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Insights into Substrate and Metal Binding from the Crystal Structure of Cyanobacterial Aldehyde Deformylating Oxygenase with Substrate Analogs Bound

X-ray diffraction
2.08Å resolution
PDB entry 4pgi coloured by chain, front view.
PDB entry 4pgi coloured by chain, side view.
PDB entry 4pgi coloured by chain, top view.
Source organism: Prochlorococcus marinus str. MIT 9313
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Aldehyde decarbonylase
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Multimeric state: monomeric
Accessible surface area: 10294.08 Å2
Buried surface area: 531.55 Å2
Dissociation area: 116.8 Å2
Dissociation energy (ΔGdiss): -3.21 kcal/mol
Dissociation entropy (TΔSdiss): -0.25 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-182056

Macromolecules

Aldehyde decarbonylase
Chain: A
Length: 250 amino acids
Theoretical weight: 28.05 KDa
Source organism: Prochlorococcus marinus str. MIT 9313
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7V6D4 (Residues: 1-243; Coverage: 100%)
Gene name: PMT_1231
Pfam: Long-chain fatty aldehyde decarbonylase
InterPro:
CATH: Ferritin
Aldehyde decarbonylase in PDB entry 4pgi, assembly 1, front view.
Aldehyde decarbonylase in PDB entry 4pgi, assembly 1, side view.
Aldehyde decarbonylase in PDB entry 4pgi, assembly 1, top view.
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