› › Structure analysis

Crystal structure of a complex between R247G LlFPG mutant and a THF containing DNA

X-ray diffraction
1.7Å resolution
PDB entry 4pcz coloured by chain, front view.
PDB entry 4pcz coloured by chain, side view.
PDB entry 4pcz coloured by chain, top view.
Source organisms:
Assembly composition:
hetero trimer (preferred)
Entry contents: 1 distinct polypeptide molecule
2 distinct DNA molecules

Quick links

Assemblies

Assembly 1 (preferred)
Download    3D Visualisation
Assembly Name: Formamidopyrimidine-DNA glycosylase and DNA
hide full assembly name
Multimeric state: hetero trimer
Accessible surface area: 16039.69 Å2
Buried surface area: 3997.26 Å2
Dissociation area: 957.06 Å2
Dissociation energy (ΔGdiss): 16.6 kcal/mol
Dissociation entropy (TΔSdiss): 10.64 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-117966

Macromolecules

Formamidopyrimidine-DNA glycosylase
Chain: A
Length: 271 amino acids
Theoretical weight: 31.02 KDa
Source organism: Lactococcus cremoris
Expression system: Escherichia coli
UniProt:
  • Canonical: P42371 (Residues: 2-273; Coverage: 99%)
Gene names: fpg, mutM
Pfam:
InterPro:
CATH:
Formamidopyrimidine-DNA glycosylase in PDB entry 4pcz, assembly 1, front view.
Formamidopyrimidine-DNA glycosylase in PDB entry 4pcz, assembly 1, side view.
Formamidopyrimidine-DNA glycosylase in PDB entry 4pcz, assembly 1, top view.
Molecule details ›

Search similar proteins

DNA chain B
Name: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3')
Representative chains: B
Source organism: synthetic construct [32630]
Expression system: Not provided
Length: 14 nucleotides
Theoretical weight: 4.05 KDa
DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3') in PDB entry 4pcz, assembly 1, front view.
DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3') in PDB entry 4pcz, assembly 1, side view.
DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3') in PDB entry 4pcz, assembly 1, top view.
Molecule details ›

Search similar DNA

DNA chain C
Name: DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3')
Representative chains: C
Source organism: synthetic construct [32630]
Expression system: Not provided
Length: 14 nucleotides
Theoretical weight: 4.36 KDa
DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3') in PDB entry 4pcz, assembly 1, front view.
DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3') in PDB entry 4pcz, assembly 1, side view.
DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3') in PDB entry 4pcz, assembly 1, top view.
Molecule details ›

Search similar DNA

Quick links