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Crystal structure of the T1L reovirus attachment protein sigma1 in complex with Junctional Adhesion Molecule-A

Source organisms:
Biochemical function: not assigned
Biological process: cell adhesion
Cellular component: not assigned

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GO terms

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned

Sequence families

Pfam Protein families (Pfam)
PF07686
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. Junctional adhesion molecule A
The deposited structure of PDB entry 4odb contains 3 copies of Pfam domain PF07686 (Immunoglobulin V-set domain) in Junctional adhesion molecule A. Showing 1 copy in chain D.

PF01664
Domain description: Reovirus viral attachment protein sigma 1
Occurring in:
  1. Outer capsid protein sigma-1
The deposited structure of PDB entry 4odb contains 3 copies of Pfam domain PF01664 (Reovirus viral attachment protein sigma 1) in Outer capsid protein sigma-1. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR013106
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. Junctional adhesion molecule A
IPR003598
Domain description: Immunoglobulin subtype 2
Occurring in:
  1. Junctional adhesion molecule A
IPR003599
Domain description: Immunoglobulin subtype
Occurring in:
  1. Junctional adhesion molecule A
IPR036179
Domain description: Immunoglobulin-like domain superfamily
Occurring in:
  1. Junctional adhesion molecule A
IPR042456
Domain description: Junctional adhesion molecule A
Occurring in:
  1. Junctional adhesion molecule A
IPR013783
Domain description: Immunoglobulin-like fold
Occurring in:
  1. Junctional adhesion molecule A
IPR007110
Domain description: Immunoglobulin-like domain
Occurring in:
  1. Junctional adhesion molecule A
IPR008982
Domain description: Adenovirus pIV-like, attachment domain
Occurring in:
  1. Outer capsid protein sigma-1
IPR002592
Domain description: Viral attachment sigma 1, reoviral
Occurring in:
  1. Outer capsid protein sigma-1

Structure domains

CATH CATH domains
2.60.40.10
Class: Mainly Beta
Architecture: Sandwich
Topology: Immunoglobulin-like
Homology: Immunoglobulins
Occurring in:
  1. Junctional adhesion molecule A
The deposited structure of PDB entry 4odb contains 3 copies of CATH domain 2.60.40.10 (Immunoglobulin-like) in Junctional adhesion molecule A. Showing 1 copy in chain D.
2.60.90.20
Class: Mainly Beta
Architecture: Sandwich
Topology: Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homology: Virus attachment protein , globular domain
Occurring in:
  1. Outer capsid protein sigma-1
The deposited structure of PDB entry 4odb contains 3 copies of CATH domain 2.60.90.20 (Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)) in Outer capsid protein sigma-1. Showing 1 copy in chain A.

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