› 4n02

X-ray diffraction
1.4Å resolution

Function and Biology Details

Reaction catalysed: 
Isopentenyl diphosphate = prenyl diphosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109609 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Isopentenyl-diphosphate delta-isomerase Chain: A
Molecule details ›
Chain: A
Length: 357 amino acids
Theoretical weight: 39.92 KDa
Source organism: Streptococcus pneumoniae CGSP14
UniProt:
  • Canonical: B2ILS5 (Residues: 2-336; Coverage: 100%)
Gene names: SPCG_0379, fni
Sequence domains: FMN-dependent dehydrogenase
Structure domains: Aldolase class I

Ligands and Environments


Cofactor: Ligand FNR 1 x FNR
1 bound ligand:
Ligand SO4 3 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL7-1
Spacegroup: I4
Unit cell:
a: 131.329Å b: 131.329Å c: 59.412Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.14 0.139 0.159

Quick links

Citations

2 review citations

Molecular docking as a popular tool in drug design, an in silico travel.
de Ruyck et al. (2016)
1 more

2 mentions without citation

A Glimpse of the Peptide Profile Presentation by Xenopus laevis MHC Class I: Crystal Structure of pXela-UAA Reveals a Distinct Peptide-Binding Groove.
Ma et al. (2020)
1 more