Reviews - 4l1u mentioned but not cited (1)
- The Paf1 Complex: A Keystone of Nuclear Regulation Operating at the Interface of Transcription and Chromatin. Francette AM, Tripplehorn SA, Arndt KM. J Mol Biol 433 166979 (2021)
Articles - 4l1u mentioned but not cited (3)
- Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin. Wier AD, Mayekar MK, Héroux A, Arndt KM, VanDemark AP. Proc Natl Acad Sci U S A 110 17290-17295 (2013)
- Fission yeast RNA triphosphatase reads an Spt5 CTD code. Doamekpor SK, Schwer B, Sanchez AM, Shuman S, Lima CD. RNA 21 113-123 (2015)
- Spt5 Phosphorylation and the Rtf1 Plus3 Domain Promote Rtf1 Function through Distinct Mechanisms. Chen JJ, Mbogning J, Hancock MA, Majdpour D, Madhok M, Nassour H, Dallagnol JC, Pagé V, Chatenet D, Tanny JC. Mol Cell Biol 40 e00150-20 (2020)
Reviews citing this publication (11)
- Getting up to speed with transcription elongation by RNA polymerase II. Jonkers I, Lis JT. Nat Rev Mol Cell Biol 16 167-177 (2015)
- Emerging Insights into the Roles of the Paf1 Complex in Gene Regulation. Van Oss SB, Cucinotta CE, Arndt KM. Trends Biochem Sci 42 788-798 (2017)
- Chromatin modification by the RNA Polymerase II elongation complex. Tanny JC. Transcription 5 e988093 (2014)
- Transcription coupled nucleotide excision repair in the yeast Saccharomyces cerevisiae: The ambiguous role of Rad26. Li S. DNA Repair (Amst) 36 43-48 (2015)
- Facilitators and Repressors of Transcription-coupled DNA Repair in Saccharomyces cerevisiae. Li W, Li S. Photochem Photobiol 93 259-267 (2017)
- Architecture of the RNA polymerase II elongation complex: new insights into Spt4/5 and Elf1. Ehara H, Sekine SI. Transcription 9 286-291 (2018)
- New connections between ubiquitylation and methylation in the co-transcriptional histone modification network. Pinto D, Pagé V, Fisher RP, Tanny JC. Curr Genet 67 695-705 (2021)
- The pleiotropic roles of SPT5 in transcription. Song A, Chen FX. Transcription 13 53-69 (2022)
- New roles for elongation factors in RNA polymerase II ubiquitylation and degradation. Reese JC. Biochim Biophys Acta Gene Regul Mech 1866 194956 (2023)
- The Archer and the Prey: The Duality of PAF1C in Antiviral Immunity. Kenaston MW, Shah PS. Viruses 15 1032 (2023)
- Transcription Pause and Escape in Neurodevelopmental Disorders. Eigenhuis KN, Somsen HB, van den Berg DLC. Front Neurosci 16 846272 (2022)
Articles citing this publication (45)
- Control of RNA Pol II Speed by PNUTS-PP1 and Spt5 Dephosphorylation Facilitates Termination by a "Sitting Duck Torpedo" Mechanism. Cortazar MA, Sheridan RM, Erickson B, Fong N, Glover-Cutter K, Brannan K, Bentley DL. Mol Cell 76 896-908.e4 (2019)
- Spt5 Plays Vital Roles in the Control of Sense and Antisense Transcription Elongation. Shetty A, Kallgren SP, Demel C, Maier KC, Spatt D, Alver BH, Cramer P, Park PJ, Winston F. Mol Cell 66 77-88.e5 (2017)
- Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex. Xu Y, Bernecky C, Lee CT, Maier KC, Schwalb B, Tegunov D, Plitzko JM, Urlaub H, Cramer P. Nat Commun 8 15741 (2017)
- The Histone Modification Domain of Paf1 Complex Subunit Rtf1 Directly Stimulates H2B Ubiquitylation through an Interaction with Rad6. Van Oss SB, Shirra MK, Bataille AR, Wier AD, Yen K, Vinayachandran V, Byeon IL, Cucinotta CE, Héroux A, Jeon J, Kim J, VanDemark AP, Pugh BF, Arndt KM. Mol Cell 64 815-825 (2016)
- Oxidative stress rapidly stabilizes promoter-proximal paused Pol II across the human genome. Nilson KA, Lawson CK, Mullen NJ, Ball CB, Spector BM, Meier JL, Price DH. Nucleic Acids Res 45 11088-11105 (2017)
- Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci. Kaiserli E, Páldi K, O'Donnell L, Batalov O, Pedmale UV, Nusinow DA, Kay SA, Chory J. Dev Cell 35 311-321 (2015)
- Structure of complete Pol II-DSIF-PAF-SPT6 transcription complex reveals RTF1 allosteric activation. Vos SM, Farnung L, Linden A, Urlaub H, Cramer P. Nat Struct Mol Biol 27 668-677 (2020)
- Insights into how Spt5 functions in transcription elongation and repressing transcription coupled DNA repair. Li W, Giles C, Li S. Nucleic Acids Res 42 7069-7083 (2014)
- Cdk9 regulates a promoter-proximal checkpoint to modulate RNA polymerase II elongation rate in fission yeast. Booth GT, Parua PK, Sansó M, Fisher RP, Lis JT. Nat Commun 9 543 (2018)
- Biochemical Analysis of Yeast Suppressor of Ty 4/5 (Spt4/5) Reveals the Importance of Nucleic Acid Interactions in the Prevention of RNA Polymerase II Arrest. Crickard JB, Fu J, Reese JC. J Biol Chem 291 9853-9870 (2016)
- RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases. Battaglia S, Lidschreiber M, Baejen C, Torkler P, Vos SM, Cramer P. Elife 6 e25637 (2017)
- The elongation factor Spt4/5 regulates RNA polymerase II transcription through the nucleosome. Crickard JB, Lee J, Lee TH, Reese JC. Nucleic Acids Res 45 6362-6374 (2017)
- Global regulation of heterochromatin spreading by Leo1. Verrier L, Taglini F, Barrales RR, Webb S, Urano T, Braun S, Bayne EH. Open Biol 5 150045 (2015)
- The m6A pathway protects the transcriptome integrity by restricting RNA chimera formation in plants. Pontier D, Picart C, El Baidouri M, Roudier F, Xu T, Lahmy S, Llauro C, Azevedo J, Laudié M, Attina A, Hirtz C, Carpentier MC, Shen L, Lagrange T. Life Sci Alliance 2 e201900393 (2019)
- The PAF complex and Prf1/Rtf1 delineate distinct Cdk9-dependent pathways regulating transcription elongation in fission yeast. Mbogning J, Nagy S, Pagé V, Schwer B, Shuman S, Fisher RP, Tanny JC. PLoS Genet 9 e1004029 (2013)
- Reversible fold-switching controls the functional cycle of the antitermination factor RfaH. Zuber PK, Schweimer K, Rösch P, Artsimovitch I, Knauer SH. Nat Commun 10 702 (2019)
- The Nucleosome Acidic Patch Regulates the H2B K123 Monoubiquitylation Cascade and Transcription Elongation in Saccharomyces cerevisiae. Cucinotta CE, Young AN, Klucevsek KM, Arndt KM. PLoS Genet 11 e1005420 (2015)
- Characterization of the Human Transcription Elongation Factor Rtf1: Evidence for Nonoverlapping Functions of Rtf1 and the Paf1 Complex. Cao QF, Yamamoto J, Isobe T, Tateno S, Murase Y, Chen Y, Handa H, Yamaguchi Y. Mol Cell Biol 35 3459-3470 (2015)
- Structural basis of human transcription-DNA repair coupling. Kokic G, Wagner FR, Chernev A, Urlaub H, Cramer P. Nature 598 368-372 (2021)
- The CIF1 protein is a master orchestrator of trypanosome cytokinesis that recruits several cytokinesis regulators to the cytokinesis initiation site. Zhou Q, An T, Pham KTM, Hu H, Li Z. J Biol Chem 293 16177-16192 (2018)
- Paf1 and Ctr9 subcomplex formation is essential for Paf1 complex assembly and functional regulation. Xie Y, Zheng M, Chu X, Chen Y, Xu H, Wang J, Zhou H, Long J. Nat Commun 9 3795 (2018)
- Phosphorylation of SPT5 by CDKD;2 Is Required for VIP5 Recruitment and Normal Flowering in Arabidopsis thaliana. Lu C, Tian Y, Wang S, Su Y, Mao T, Huang T, Chen Q, Xu Z, Ding Y. Plant Cell 29 277-291 (2017)
- ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in Arabidopsis. Perrella G, Davidson MLH, O'Donnell L, Nastase AM, Herzyk P, Breton G, Pruneda-Paz JL, Kay SA, Chory J, Kaiserli E. Proc Natl Acad Sci U S A 115 E4503-E4511 (2018)
- Functional interaction of Rpb1 and Spt5 C-terminal domains in co-transcriptional histone modification. Mbogning J, Pagé V, Burston J, Schwenger E, Fisher RP, Schwer B, Shuman S, Tanny JC. Nucleic Acids Res 43 9766-9775 (2015)
- The nucleosome acidic patch directly interacts with subunits of the Paf1 and FACT complexes and controls chromatin architecture in vivo. Cucinotta CE, Hildreth AE, McShane BM, Shirra MK, Arndt KM. Nucleic Acids Res 47 8410-8423 (2019)
- Cdk9 and H2Bub1 signal to Clr6-CII/Rpd3S to suppress aberrant antisense transcription. Sansó M, Parua PK, Pinto D, Svensson JP, Pagé V, Bitton DA, MacKinnon S, Garcia P, Hidalgo E, Bähler J, Tanny JC, Fisher RP. Nucleic Acids Res 48 7154-7168 (2020)
- The Establishment of a Hyperactive Structure Allows the Tumour Suppressor Protein p53 to Function through P-TEFb during Limited CDK9 Kinase Inhibition. Albert TK, Antrecht C, Kremmer E, Meisterernst M. PLoS One 11 e0146648 (2016)
- Transcriptional elongation factor Paf1 core complex adopts a spirally wrapped solenoidal topology. Deng P, Zhou Y, Jiang J, Li H, Tian W, Cao Y, Qin Y, Kim J, Roeder RG, Patel DJ, Wang Z. Proc Natl Acad Sci U S A 115 9998-10003 (2018)
- Cdc73 suppresses genome instability by mediating telomere homeostasis. Nene RV, Putnam CD, Li BZ, Nguyen KG, Srivatsan A, Campbell CS, Desai A, Kolodner RD. PLoS Genet 14 e1007170 (2018)
- Structural and biochemical insights into the DNA-binding mode of MjSpt4p:Spt5 complex at the exit tunnel of RNAPII. Guo G, Gao Y, Zhu Z, Zhao D, Liu Z, Zhou H, Niu L, Teng M. J Struct Biol 192 418-425 (2015)
- Flagellum inheritance in Trypanosoma brucei requires a kinetoplastid-specific protein phosphatase. Zhou Q, Dong G, Li Z. J Biol Chem 293 8508-8520 (2018)
- Biochemical insights into Paf1 complex-induced stimulation of Rad6/Bre1-mediated H2B monoubiquitination. Chen F, Liu B, Guo L, Ge X, Feng W, Li DF, Zhou H, Long J. Proc Natl Acad Sci U S A 118 e2025291118 (2021)
- Functional interaction of human Ssu72 with RNA polymerase II complexes. Spector BM, Turek ME, Price DH. PLoS One 14 e0213598 (2019)
- The Paf1 Complex Broadly Impacts the Transcriptome of Saccharomyces cerevisiae. Ellison MA, Lederer AR, Warner MH, Mavrich TN, Raupach EA, Heisler LE, Nislow C, Lee MT, Arndt KM. Genetics 212 711-728 (2019)
- The pausing zone and control of RNA polymerase II elongation by Spt5: Implications for the pause-release model. Fong N, Sheridan RM, Ramachandran S, Bentley DL. Mol Cell 82 3632-3645.e4 (2022)
- The yeast transcription elongation factor Spt4/5 is a sequence-specific RNA binding protein. Blythe AJ, Yazar-Klosinski B, Webster MW, Chen E, Vandevenne M, Bendak K, Mackay JP, Hartzog GA, Vrielink A. Protein Sci 25 1710-1721 (2016)
- The kinetoplastid-specific phosphatase KPP1 attenuates PLK activity to facilitate flagellum inheritance in Trypanosoma brucei. An T, Hu H, Li Z. Sci Signal 14 eabc6435 (2021)
- Chromatin regulation of transcriptional enhancers and cell fate by the Sotos syndrome gene NSD1. Sun Z, Lin Y, Islam MT, Koche R, Hedehus L, Liu D, Huang C, Vierbuchen T, Sawyers CL, Helin K. Mol Cell 83 2398-2416.e12 (2023)
- Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae. Shirra MK, Kocik RA, Ellison MA, Arndt KM. G3 (Bethesda) 11 jkab298 (2021)
- Paf1 complex subunit Rtf1 stimulates H2B ubiquitylation by interacting with the highly conserved N-terminal helix of Rad6. Fetian T, McShane BM, Horan NL, Shodja DN, True JD, Mosley AL, Arndt KM. Proc Natl Acad Sci U S A 120 e2220041120 (2023)
- The NELF pausing checkpoint mediates the functional divergence of Cdk9. DeBerardine M, Booth GT, Versluis PP, Lis JT. Nat Commun 14 2762 (2023)
- The Paf1 complex is required for RNA polymerase II removal in response to DNA damage. Chen F, Liu B, Zhou H, Long J. Proc Natl Acad Sci U S A 119 e2207332119 (2022)
- Spt5 C-terminal repeat domain phosphorylation and length negatively regulate heterochromatin through distinct mechanisms. MacKinnon S, Pagé V, Chen JJ, Shariat-Panahi A, Martin RD, Hébert TE, Tanny JC. PLoS Genet 19 e1010492 (2023)
- Spt6 directly interacts with Cdc73 and is required for Paf1 complex occupancy at active genes in Saccharomyces cerevisiae. Ellison MA, Namjilsuren S, Shirra MK, Blacksmith MS, Schusteff RA, Kerr EM, Fang F, Xiang Y, Shi Y, Arndt KM. Nucleic Acids Res 51 4814-4830 (2023)
- Targeted RNAi screen identifies transcriptional mechanisms that prevent premature degeneration of adult photoreceptors. Escobedo SE, McGovern SE, Jauregui-Lozano JP, Stanhope SC, Anik P, Singhal K, DeBernardis R, Weake VM. Front Epigenet Epigenom 1 1187980 (2023)