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Crystal structure of beta'-COP/PEDVspike complex

X-ray diffraction
1.559Å resolution
PDB entry 4j79 coloured by chain, front view.
PDB entry 4j79 coloured by chain, side view.
PDB entry 4j79 coloured by chain, top view.
Source organisms:
Assembly composition:
hetero dimer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Coatomer subunit beta' and Spike glycoprotein
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Multimeric state: hetero dimer
Accessible surface area: 11965.18 Å2
Buried surface area: 813.48 Å2
Dissociation area: 406.74 Å2
Dissociation energy (ΔGdiss): -0.29 kcal/mol
Dissociation entropy (TΔSdiss): 6.37 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-154457

Macromolecules

Coatomer subunit beta'
Chain: A
Length: 301 amino acids
Theoretical weight: 34.31 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P41811 (Residues: 1-301; Coverage: 34%)
Gene names: G2827, SEC27, YGL137W
Pfam: WD domain, G-beta repeat
InterPro:
CATH: YVTN repeat-like/Quinoprotein amine dehydrogenase
Coatomer subunit beta' in PDB entry 4j79, assembly 1, front view.
Coatomer subunit beta' in PDB entry 4j79, assembly 1, side view.
Coatomer subunit beta' in PDB entry 4j79, assembly 1, top view.
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Spike glycoprotein
Chain: B
Length: 6 amino acids
Theoretical weight: 741 Da
Source organism: Porcine epidemic diarrhea virus
Expression system: Not provided
UniProt:
  • Canonical: Q91AV1 (Residues: 1378-1383; Coverage: 0%)
Gene names: 2, S
Spike glycoprotein in PDB entry 4j79, assembly 1, front view.
Spike glycoprotein in PDB entry 4j79, assembly 1, side view.
Spike glycoprotein in PDB entry 4j79, assembly 1, top view.
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