4iwq Citations

Crystal structure and mechanism of activation of TANK-binding kinase 1.

Cell Rep 3 734-46 (2013)
Related entries: 4iw0, 4iwo, 4iwp

Cited: 107 times
EuropePMC logo PMID: 23453971

Abstract

Tank-binding kinase I (TBK1) plays a key role in the innate immune system by integrating signals from pattern-recognition receptors. Here, we report the X-ray crystal structures of inhibitor-bound inactive and active TBK1 determined to 2.6 Å and 4.0 Å resolution, respectively. The structures reveal a compact dimer made up of trimodular subunits containing an N-terminal kinase domain (KD), a ubiquitin-like domain (ULD), and an α-helical scaffold dimerization domain (SDD). Activation rearranges the KD into an active conformation while maintaining the overall dimer conformation. Low-resolution SAXS studies reveal that the missing C-terminal domain (CTD) extends away from the main body of the kinase dimer. Mutants that interfere with TBK1 dimerization show significantly reduced trans-autophosphorylation but retain the ability to bind adaptor proteins through the CTD. Our results provide detailed insights into the architecture of TBK1 and the molecular mechanism of activation.

Articles - 4iwq mentioned but not cited (2)

  1. Identification of Pyrimidine-Based Lead Compounds for Understudied Kinases Implicated in Driving Neurodegeneration. Drewry DH, Annor-Gyamfi JK, Wells CI, Pickett JE, Dederer V, Preuss F, Mathea S, Axtman AD. J Med Chem 65 1313-1328 (2022)
  2. Identification of 1H-pyrazolo[3,4-b]pyridine derivatives as novel and potent TBK1 inhibitors: design, synthesis, biological evaluation, and molecular docking study. Sun Y, Tang H, Wang X, Feng F, Fan T, Zhao D, Xiong B, Xie H, Liu T. J Enzyme Inhib Med Chem 37 1411-1425 (2022)


Reviews citing this publication (26)

  1. The IκB kinase complex in NF-κB regulation and beyond. Hinz M, Scheidereit C. EMBO Rep 15 46-61 (2014)
  2. TBK1: a new player in ALS linking autophagy and neuroinflammation. Oakes JA, Davies MC, Collins MO. Mol Brain 10 5 (2017)
  3. Small molecules targeting the innate immune cGAS‒STING‒TBK1 signaling pathway. Ding C, Song Z, Shen A, Chen T, Zhang A. Acta Pharm Sin B 10 2272-2298 (2020)
  4. The interactions between cGAS-STING pathway and pathogens. Cheng Z, Dai T, He X, Zhang Z, Xie F, Wang S, Zhang L, Zhou F. Signal Transduct Target Ther 5 91 (2020)
  5. Optineurin: A Coordinator of Membrane-Associated Cargo Trafficking and Autophagy. Ryan TA, Tumbarello DA. Front Immunol 9 1024 (2018)
  6. TANK-Binding Kinase 1-Dependent Responses in Health and Autoimmunity. Louis C, Burns C, Wicks I. Front Immunol 9 434 (2018)
  7. The intricate interplay between RNA viruses and NF-κB. Schmitz ML, Kracht M, Saul VV. Biochim Biophys Acta 1843 2754-2764 (2014)
  8. Ubiquitin and Receptor-Dependent Mitophagy Pathways and Their Implication in Neurodegeneration. Fritsch LE, Moore ME, Sarraf SA, Pickrell AM. J Mol Biol 432 2510-2524 (2020)
  9. Risk Factors and Emerging Therapies in Amyotrophic Lateral Sclerosis. Nowicka N, Juranek J, Juranek JK, Wojtkiewicz J. Int J Mol Sci 20 E2616 (2019)
  10. TANK-binding kinase 1 as a novel therapeutic target for viral diseases. Zhao C, Zhao W. Expert Opin Ther Targets 23 437-446 (2019)
  11. Roles for the IKK-Related Kinases TBK1 and IKKε in Cancer. Durand JK, Zhang Q, Baldwin AS. Cells 7 E139 (2018)
  12. TBK1 inhibitors: a review of patent literature (2011 - 2014). Yu T, Yang Y, Yin DQ, Hong S, Son YJ, Kim JH, Cho JY. Expert Opin Ther Pat 25 1385-1396 (2015)
  13. Mendelian genes in primary open angle glaucoma. Sears NC, Boese EA, Miller MA, Fingert JH. Exp Eye Res 186 107702 (2019)
  14. The role of TBK1 in cancer pathogenesis and anticancer immunity. Runde AP, Mack R, S J PB, Zhang J. J Exp Clin Cancer Res 41 135 (2022)
  15. Regulatory Roles of PINK1-Parkin and AMPK in Ubiquitin-Dependent Skeletal Muscle Mitophagy. Seabright AP, Lai YC. Front Physiol 11 608474 (2020)
  16. Targeting TANK-binding kinase 1 (TBK1) in cancer. Revach OY, Liu S, Jenkins RW. Expert Opin Ther Targets 24 1065-1078 (2020)
  17. Association of the TBK1 mutation p.Ile334Thr with frontotemporal dementia and literature review. Yu H, Yu W, Luo SS, Yang YJ, Liu FT, Zhang Y, Chen Y, Sun YM, Wu JJ, Wu JJ. Mol Genet Genomic Med 7 e547 (2019)
  18. The Role of Optineurin in Antiviral Type I Interferon Production. Outlioua A, Pourcelot M, Arnoult D. Front Immunol 9 853 (2018)
  19. Kinase regulation by liquid-liquid phase separation. López-Palacios TP, Andersen JL. Trends Cell Biol 33 649-666 (2023)
  20. Inhibitory targeting cGAS-STING-TBK1 axis: Emerging strategies for autoimmune diseases therapy. Zhang M, Zou Y, Zhou X, Zhou J. Front Immunol 13 954129 (2022)
  21. Polyvalent design in the cGAS-STING pathway. Bennett ZT, Li S, Sumer BD, Gao J. Semin Immunol 56 101580 (2021)
  22. Antagonisms of ASFV towards Host Defense Mechanisms: Knowledge Gaps in Viral Immune Evasion and Pathogenesis. Yu L, Zhu Z, Deng J, Tian K, Li X. Viruses 15 574 (2023)
  23. Cellular Metabolites Regulate Central Nucleic Acid Sensing Pathways. Blay-Cadanet J, Pedersen A, Holm CK. Front Immunol 12 635738 (2021)
  24. ISG15: A link between innate immune signaling, DNA replication, and genome stability. Wardlaw CP, Petrini JHJ. Bioessays 45 e2300042 (2023)
  25. The Role of cGAS-STING Signalling in Metabolic Diseases: from Signalling Networks to Targeted Intervention. Gong J, Gao X, Ge S, Li H, Wang R, Zhao L. Int J Biol Sci 20 152-174 (2024)
  26. [Research progress on the role of TANK-binding kinase 1 in anti-virus innate immune response]. Wang X, Zhang Y, Chen W. Zhejiang Da Xue Xue Bao Yi Xue Ban 45 550-557 (2016)

Articles citing this publication (79)

  1. The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy. Lazarou M, Sliter DA, Kane LA, Sarraf SA, Wang C, Burman JL, Sideris DP, Fogel AI, Youle RJ. Nature 524 309-314 (2015)
  2. Haploinsufficiency of TBK1 causes familial ALS and fronto-temporal dementia. Freischmidt A, Wieland T, Richter B, Ruf W, Schaeffer V, Müller K, Marroquin N, Nordin F, Hübers A, Weydt P, Pinto S, Press R, Millecamps S, Molko N, Bernard E, Desnuelle C, Soriani MH, Dorst J, Graf E, Nordström U, Feiler MS, Putz S, Boeckers TM, Meyer T, Winkler AS, Winkelman J, de Carvalho M, Thal DR, Otto M, Brännström T, Volk AE, Kursula P, Danzer KM, Lichtner P, Dikic I, Meitinger T, Ludolph AC, Strom TM, Andersen PM, Weishaupt JH. Nat Neurosci 18 631-636 (2015)
  3. Structural basis of STING binding with and phosphorylation by TBK1. Zhang C, Shang G, Gui X, Zhang X, Bai XC, Chen ZJ. Nature 567 394-398 (2019)
  4. TBK1 controls autophagosomal engulfment of polyubiquitinated mitochondria through p62/SQSTM1 phosphorylation. Matsumoto G, Shimogori T, Hattori N, Nukina N. Hum Mol Genet 24 4429-4442 (2015)
  5. The ubiquitin E3 ligase TRIM31 promotes aggregation and activation of the signaling adaptor MAVS through Lys63-linked polyubiquitination. Liu B, Zhang M, Chu H, Zhang H, Wu H, Song G, Wang P, Zhao K, Hou J, Wang X, Zhang L, Gao C. Nat Immunol 18 214-224 (2017)
  6. HSV-1 ICP27 targets the TBK1-activated STING signalsome to inhibit virus-induced type I IFN expression. Christensen MH, Jensen SB, Miettinen JJ, Luecke S, Prabakaran T, Reinert LS, Mettenleiter T, Chen ZJ, Knipe DM, Sandri-Goldin RM, Enquist LW, Hartmann R, Mogensen TH, Rice SA, Nyman TA, Matikainen S, Paludan SR. EMBO J 35 1385-1399 (2016)
  7. Dengue Virus NS Proteins Inhibit RIG-I/MAVS Signaling by Blocking TBK1/IRF3 Phosphorylation: Dengue Virus Serotype 1 NS4A Is a Unique Interferon-Regulating Virulence Determinant. Dalrymple NA, Cimica V, Mackow ER. mBio 6 e00553-15 (2015)
  8. TRIM23 mediates virus-induced autophagy via activation of TBK1. Sparrer KMJ, Gableske S, Zurenski MA, Parker ZM, Full F, Baumgart GJ, Kato J, Pacheco-Rodriguez G, Liang C, Pornillos O, Moss J, Vaughan M, Gack MU. Nat Microbiol 2 1543-1557 (2017)
  9. Hippo signalling governs cytosolic nucleic acid sensing through YAP/TAZ-mediated TBK1 blockade. Zhang Q, Meng F, Chen S, Plouffe SW, Wu S, Liu S, Li X, Zhou R, Wang J, Zhao B, Liu J, Qin J, Zou J, Feng XH, Guan KL, Xu P. Nat Cell Biol 19 362-374 (2017)
  10. MAVS activates TBK1 and IKKε through TRAFs in NEMO dependent and independent manner. Fang R, Jiang Q, Zhou X, Wang C, Guan Y, Tao J, Xi J, Feng JM, Jiang Z. PLoS Pathog 13 e1006720 (2017)
  11. Loss of TBK1 is a frequent cause of frontotemporal dementia in a Belgian cohort. Gijselinck I, Van Mossevelde S, van der Zee J, Sieben A, Philtjens S, Heeman B, Engelborghs S, Vandenbulcke M, De Baets G, Bäumer V, Cuijt I, Van den Broeck M, Peeters K, Mattheijssens M, Rousseau F, Vandenberghe R, De Jonghe P, Cras P, De Deyn PP, Martin JJ, Cruts M, Van Broeckhoven C, BELNEU Consortium. Neurology 85 2116-2125 (2015)
  12. E3 ubiquitin ligase RNF128 promotes innate antiviral immunity through K63-linked ubiquitination of TBK1. Song G, Liu B, Li Z, Wu H, Wang P, Zhao K, Jiang G, Zhang L, Gao C. Nat Immunol 17 1342-1351 (2016)
  13. Inflammation produces catecholamine resistance in obesity via activation of PDE3B by the protein kinases IKKε and TBK1. Mowers J, Uhm M, Reilly SM, Simon J, Leto D, Chiang SH, Chang L, Saltiel AR. Elife 2 e01119 (2013)
  14. Transcription factor dimerization activates the p300 acetyltransferase. Ortega E, Rengachari S, Ibrahim Z, Hoghoughi N, Gaucher J, Holehouse AS, Khochbin S, Panne D. Nature 562 538-544 (2018)
  15. A structural basis for IκB kinase 2 activation via oligomerization-dependent trans auto-phosphorylation. Polley S, Huang DB, Hauenstein AV, Fusco AJ, Zhong X, Vu D, Schröfelbauer B, Kim Y, Hoffmann A, Verma IM, Ghosh G, Huxford T. PLoS Biol 11 e1001581 (2013)
  16. Evasion of antiviral immunity through sequestering of TBK1/IKKε/IRF3 into viral inclusion bodies. Wu X, Qi X, Qu B, Zhang Z, Liang M, Li C, Cardona CJ, Li D, Xing Z. J Virol 88 3067-3076 (2014)
  17. AMPK activation induces mitophagy and promotes mitochondrial fission while activating TBK1 in a PINK1-Parkin independent manner. Seabright AP, Fine NHF, Barlow JP, Lord SO, Musa I, Gray A, Bryant JA, Banzhaf M, Lavery GG, Hardie DG, Hodson DJ, Philp A, Lai YC. FASEB J 34 6284-6301 (2020)
  18. Structural insights into the interaction and disease mechanism of neurodegenerative disease-associated optineurin and TBK1 proteins. Li F, Xie X, Wang Y, Liu J, Cheng X, Guo Y, Gong Y, Hu S, Pan L. Nat Commun 7 12708 (2016)
  19. Structural insights into the functions of TBK1 in innate antimicrobial immunity. Shu C, Sankaran B, Chaton CT, Herr AB, Mishra A, Peng J, Li P. Structure 21 1137-1148 (2013)
  20. Crystal structure of a human IκB kinase β asymmetric dimer. Liu S, Misquitta YR, Olland A, Johnson MA, Kelleher KS, Kriz R, Lin LL, Stahl M, Mosyak L. J Biol Chem 288 22758-22767 (2013)
  21. TBK1 Mutation Spectrum in an Extended European Patient Cohort with Frontotemporal Dementia and Amyotrophic Lateral Sclerosis. van der Zee J, Gijselinck I, Van Mossevelde S, Perrone F, Dillen L, Heeman B, Bäumer V, Engelborghs S, De Bleecker J, Baets J, Gelpi E, Rojas-García R, Clarimón J, Lleó A, Diehl-Schmid J, Alexopoulos P, Perneczky R, Synofzik M, Just J, Schöls L, Graff C, Thonberg H, Borroni B, Padovani A, Jordanova A, Sarafov S, Tournev I, de Mendonça A, Miltenberger-Miltényi G, Simões do Couto F, Ramirez A, Jessen F, Heneka MT, Gómez-Tortosa E, Danek A, Cras P, Vandenberghe R, De Jonghe P, De Deyn PP, Sleegers K, Cruts M, Van Broeckhoven C, Goeman J, Nuytten D, Smets K, Robberecht W, Damme PV, Bleecker J, Santens P, Dermaut B, Versijpt J, Michotte A, Ivanoiu A, Deryck O, Bergmans B, Delbeck J, Bruyland M, Willems C, Salmon E, Pastor P, Ortega-Cubero S, Benussi L, Ghidoni R, Binetti G, Hernández I, Boada M, Ruiz A, Sorbi S, Nacmias B, Bagnoli S, Sorbi S, Sanchez-Valle R, Llado A, Santana I, Rosário Almeida M, Frisoni GB, Maetzler W, Matej R, Fraidakis MJ, Kovacs GG, Fabrizi GM, Testi S. Hum Mutat 38 297-309 (2017)
  22. ALS- and FTD-associated missense mutations in TBK1 differentially disrupt mitophagy. Harding O, Evans CS, Ye J, Cheung J, Maniatis T, Holzbaur ELF. Proc Natl Acad Sci U S A 118 e2025053118 (2021)
  23. The Golgi apparatus acts as a platform for TBK1 activation after viral RNA sensing. Pourcelot M, Zemirli N, Silva Da Costa L, Loyant R, Garcin D, Vitour D, Munitic I, Vazquez A, Arnoult D. BMC Biol 14 69 (2016)
  24. Experimental and natural evidence of SARS-CoV-2-infection-induced activation of type I interferon responses. Banerjee A, El-Sayes N, Budylowski P, Jacob RA, Richard D, Maan H, Aguiar JA, Demian WL, Baid K, D'Agostino MR, Ang JC, Murdza T, Tremblay BJ, Afkhami S, Karimzadeh M, Irving AT, Yip L, Ostrowski M, Hirota JA, Kozak R, Capellini TD, Miller MS, Wang B, Mubareka S, McGeer AJ, McArthur AG, Doxey AC, Mossman K. iScience 24 102477 (2021)
  25. Zika virus NS5 protein antagonizes type I interferon production via blocking TBK1 activation. Lin S, Yang S, He J, Guest JD, Ma Z, Yang L, Pierce BG, Tang Q, Zhang YJ. Virology 527 180-187 (2019)
  26. Two Conserved Amino Acids within the NSs of Severe Fever with Thrombocytopenia Syndrome Phlebovirus Are Essential for Anti-interferon Activity. Moriyama M, Igarashi M, Koshiba T, Irie T, Takada A, Ichinohe T. J Virol 92 e00706-18 (2018)
  27. Murine gammaherpesvirus 68 encoding open reading frame 11 targets TANK binding kinase 1 to negatively regulate the host type I interferon response. Kang HR, Cheong WC, Park JE, Ryu S, Cho HJ, Youn H, Ahn JH, Song MJ. J Virol 88 6832-6846 (2014)
  28. Discovery of GSK8612, a Highly Selective and Potent TBK1 Inhibitor. Thomson DW, Poeckel D, Zinn N, Rau C, Strohmer K, Wagner AJ, Graves AP, Perrin J, Bantscheff M, Duempelfeld B, Kasparcova V, Ramanjulu JM, Pesiridis GS, Muelbaier M, Bergamini G. ACS Med Chem Lett 10 780-785 (2019)
  29. Ligand-induced Ordering of the C-terminal Tail Primes STING for Phosphorylation by TBK1. Tsuchiya Y, Jounai N, Takeshita F, Ishii KJ, Mizuguchi K. EBioMedicine 9 87-96 (2016)
  30. The tyrosine kinase Src promotes phosphorylation of the kinase TBK1 to facilitate type I interferon production after viral infection. Li X, Yang M, Yu Z, Tang S, Wang L, Cao X, Chen T. Sci Signal 10 eaae0435 (2017)
  31. Mutational analysis of TBK1 in Taiwanese patients with amyotrophic lateral sclerosis. Tsai PC, Liu YC, Lin KP, Liu YT, Liao YC, Hsiao CT, Soong BW, Yip PK, Lee YC. Neurobiol Aging 40 191.e11-191.e16 (2016)
  32. Casein kinase II controls TBK1/IRF3 activation in IFN response against viral infection. Du M, Liu J, Chen X, Xie Y, Yuan C, Xiang Y, Sun B, Lan K, Chen M, James SJ, Zhang Y, Zhong J, Xiao H. J Immunol 194 4477-4488 (2015)
  33. Thymoquinone Suppresses IRF-3-Mediated Expression of Type I Interferons via Suppression of TBK1. Aziz N, Son YJ, Cho JY. Int J Mol Sci 19 E1355 (2018)
  34. Retinoic acid worsens ATG10-dependent autophagy impairment in TBK1-mutant hiPSC-derived motoneurons through SQSTM1/p62 accumulation. Catanese A, Olde Heuvel F, Mulaw M, Demestre M, Higelin J, Barbi G, Freischmidt A, Weishaupt JH, Ludolph AC, Roselli F, Boeckers TM. Autophagy 15 1719-1737 (2019)
  35. A non-canonical, interferon-independent signaling activity of cGAMP triggers DNA damage response signaling. Banerjee D, Langberg K, Abbas S, Odermatt E, Yerramothu P, Volaric M, Reidenbach MA, Krentz KJ, Rubinstein CD, Brautigan DL, Abbas T, Gelfand BD, Ambati J, Kerur N. Nat Commun 12 6207 (2021)
  36. Novel TBK1 truncating mutation in a familial amyotrophic lateral sclerosis patient of Chinese origin. Williams KL, McCann EP, Fifita JA, Zhang K, Duncan EL, Leo PJ, Marshall M, Rowe DB, Nicholson GA, Blair IP. Neurobiol Aging 36 3334.e1-3334.e5 (2015)
  37. Phosphorylation of the exocyst protein Exo84 by TBK1 promotes insulin-stimulated GLUT4 trafficking. Uhm M, Bazuine M, Zhao P, Chiang SH, Xiong T, Karunanithi S, Chang L, Saltiel AR. Sci Signal 10 eaah5085 (2017)
  38. TRIM14 Is a Key Regulator of the Type I IFN Response during Mycobacterium tuberculosis Infection. Hoffpauir CT, Bell SL, West KO, Jing T, Wagner AR, Torres-Odio S, Cox JS, West AP, Li P, Patrick KL, Watson RO. J Immunol 205 153-167 (2020)
  39. A TRAF3-NIK module differentially regulates DNA vs RNA pathways in innate immune signaling. Parvatiyar K, Pindado J, Dev A, Aliyari SR, Zaver SA, Gerami H, Chapon M, Ghaffari AA, Dhingra A, Cheng G. Nat Commun 9 2770 (2018)
  40. Effects of ALS-associated TANK binding kinase 1 mutations on protein-protein interactions and kinase activity. Ye J, Cheung J, Gerbino V, Ahlsén G, Zimanyi C, Hirsh D, Maniatis T. Proc Natl Acad Sci U S A 116 24517-24526 (2019)
  41. Lithium attenuates IFN-β production and antiviral response via inhibition of TANK-binding kinase 1 kinase activity. Wang L, Zhang L, Zhao X, Zhang M, Zhao W, Gao C. J Immunol 191 4392-4398 (2013)
  42. MMB triazole analogs are potent NF-κB inhibitors and anti-cancer agents against both hematological and solid tumor cells. Janganati V, Ponder J, Balasubramaniam M, Bhat-Nakshatri P, Bar EE, Nakshatri H, Jordan CT, Crooks PA. Eur J Med Chem 157 562-581 (2018)
  43. Lck/Hck/Fgr-Mediated Tyrosine Phosphorylation Negatively Regulates TBK1 to Restrain Innate Antiviral Responses. Liu S, Chen S, Li X, Wu S, Zhang Q, Jin Q, Hu L, Zhou R, Yu Z, Meng F, Wang S, Huang Y, Ye S, Shen L, Xia Z, Zou J, Feng XH, Xu P. Cell Host Microbe 21 754-768.e5 (2017)
  44. Carboxylic Acid Derivatives of Amlexanox Display Enhanced Potency toward TBK1 and IKKε and Reveal Mechanisms for Selective Inhibition. Beyett TS, Gan X, Reilly SM, Chang L, Gomez AV, Saltiel AR, Showalter HD, Tesmer JJG. Mol Pharmacol 94 1210-1219 (2018)
  45. Cellular Requirements for Sensing and Elimination of Incoming HSV-1 DNA and Capsids. Sun C, Luecke S, Bodda C, Jønsson KL, Cai Y, Zhang BC, Jensen SB, Nordentoft I, Jensen JM, Jakobsen MR, Paludan SR. J Interferon Cytokine Res 39 191-204 (2019)
  46. Histone deacetylase 3 promotes innate antiviral immunity through deacetylation of TBK1. Tang JL, Yang Q, Xu CH, Zhao H, Liu YL, Liu CY, Zhou Y, Gai DW, Pei RJ, Wang Y, Hu X, Zhong B, Wang YY, Chen XW, Chen JZ. Protein Cell 12 261-278 (2021)
  47. In Silico Knockout Studies of Xenophagic Capturing of Salmonella. Scheidel J, Amstein L, Ackermann J, Dikic I, Koch I. PLoS Comput Biol 12 e1005200 (2016)
  48. The Capsid Protein of Hepatitis E Virus Inhibits Interferon Induction via Its N-terminal Arginine-Rich Motif. Lin S, Yang Y, Nan Y, Ma Z, Yang L, Zhang YJ. Viruses 11 E1050 (2019)
  49. Mechanism of endogenous regulation of the type I interferon response by suppressor of IκB kinase epsilon (SIKE), a novel substrate of TANK-binding kinase 1 (TBK1). Marion JD, Roberts CF, Call RJ, Forbes JL, Nelson KT, Bell JE, Bell JK. J Biol Chem 288 18612-18623 (2013)
  50. NOD2 and TLR2 Signal via TBK1 and PI31 to Direct Cross-Presentation and CD8 T Cell Responses. Corridoni D, Shiraishi S, Chapman T, Steevels T, Muraro D, Thézénas ML, Prota G, Chen JL, Gileadi U, Ternette N, Cerundolo V, Simmons A. Front Immunol 10 958 (2019)
  51. Design, synthesis, and biological activity of substituted 2-amino-5-oxo-5H-chromeno[2,3-b]pyridine-3-carboxylic acid derivatives as inhibitors of the inflammatory kinases TBK1 and IKKε for the treatment of obesity. Beyett TS, Gan X, Reilly SM, Gomez AV, Chang L, Tesmer JJG, Saltiel AR, Showalter HD. Bioorg Med Chem 26 5443-5461 (2018)
  52. Genetic and functional analysis of TBK1 variants in Korean patients with sporadic amyotrophic lateral sclerosis. Kim YE, Oh KW, Noh MY, Nahm M, Park J, Lim SM, Jang JH, Cho EH, Ki CS, Lee S, Kim SH. Neurobiol Aging 50 170.e1-170.e6 (2017)
  53. Regulatory subunit NEMO promotes polyubiquitin-dependent induction of NF-κB through a targetable second interaction with upstream activator IKK2. Ko MS, Cohen SN, Polley S, Mahata SK, Biswas T, Huxford T, Ghosh G. J Biol Chem 298 101864 (2022)
  54. TBK1 interacts with tau and enhances neurodegeneration in tauopathy. Abreha MH, Ojelade S, Dammer EB, McEachin ZT, Duong DM, Gearing M, Bassell GJ, Lah JJ, Levey AI, Shulman JM, Seyfried NT. J Biol Chem 296 100760 (2021)
  55. Glycolipid iGb3 feedback amplifies innate immune responses via CD1d reverse signaling. Liu X, Zhang P, Zhang Y, Wang Z, Xu S, Li Y, Huai W, Zhou Q, Chen X, Chen X, Li N, Wang P, Li Y, Cao X. Cell Res 29 42-53 (2019)
  56. IKKε and TBK1 expression in gastric cancer. Lee SE, Hong M, Cho J, Lee J, Kim KM. Oncotarget 8 16233-16242 (2017)
  57. Systematic analysis of the IL-17 receptor signalosome reveals a robust regulatory feedback loop. Draberova H, Janusova S, Knizkova D, Semberova T, Pribikova M, Ujevic A, Harant K, Knapkova S, Hrdinka M, Fanfani V, Stracquadanio G, Drobek A, Ruppova K, Stepanek O, Draber P. EMBO J 39 e104202 (2020)
  58. Cerebellar Kv3.3 potassium channels activate TANK-binding kinase 1 to regulate trafficking of the cell survival protein Hax-1. Zhang Y, Varela L, Szigeti-Buck K, Williams A, Stoiljkovic M, Šestan-Peša M, Henao-Mejia J, D'Acunzo P, Levy E, Flavell RA, Horvath TL, Kaczmarek LK. Nat Commun 12 1731 (2021)
  59. Deregulated expression of TANK in glioblastomas triggers pro-tumorigenic ERK1/2 and AKT signaling pathways. Stellzig J, Chariot A, Shostak K, Ismail Göktuna S, Renner F, Acker T, Pagenstecher A, Schmitz ML. Oncogenesis 2 e79 (2013)
  60. Functionally distinct effects of the C-terminal regions of IKKε and TBK1 on type I IFN production. Nakatsu Y, Matsuoka M, Chang TH, Otsuki N, Noda M, Kimura H, Sakai K, Kato H, Takeda M, Kubota T. PLoS One 9 e94999 (2014)
  61. PLA1A Participates in the Antiviral Innate Immune Response by Facilitating the Recruitment of TANK-Binding Kinase 1 to Mitochondria. Gao X, Chen D, Hu X, Zhou Y, Wang Y, Wu C, Chen J, Wang Y, Pei R, Chen X. J Innate Immun 10 315-327 (2018)
  62. Molecular characterization, expression of chicken TBK1 gene and its effect on IRF3 signaling pathway. Wang Y, Yin Y, Lan X, Ye F, Tian K, Zhao X, Yin H, Li D, Xu H, Liu Y, Zhu Q. PLoS One 12 e0177608 (2017)
  63. Expression and prognostic role of IKBKE and TBK1 in stage I non-small cell lung cancer. Wang X, Teng F, Lu J, Mu D, Zhang J, Yu J. Cancer Manag Res 11 6593-6602 (2019)
  64. Probing kinase activation and substrate specificity with an engineered monomeric IKK2. Hauenstein AV, Rogers WE, Shaul JD, Huang DB, Ghosh G, Huxford T. Biochemistry 53 2064-2073 (2014)
  65. Recent progress on the activation of the cGAS-STING pathway and its regulation by biomolecular condensation. Yu X, Zhao Z, Jiang Z. J Mol Cell Biol 14 mjac042 (2022)
  66. Structural insights of resveratrol with its binding partners in the toll-like receptor 4 pathway. Saqib U, Faisal SM, Saluja R, Baig MS. J Cell Biochem 120 452-460 (2019)
  67. Modulation of Kinase Activities In Vitro by Hepatitis C Virus Protease NS3/NS4A Mediated-Cleavage of Key Immune Modulator Kinases. Abdullah MAF, McWhirter SM, Suo Z. Cells 12 406 (2023)
  68. Multi-Functional MPT Protein as a Therapeutic Agent against Mycobacterium tuberculosis. Kim JS, Cho E, Mun SJ, Kim S, Kim SY, Kim DG, Son W, Jeon HI, Kim HK, Jeong YJ, Jang S, Kim HS, Yang CS. Biomedicines 9 545 (2021)
  69. A critical evaluation of protein kinase regulation by activation loop autophosphorylation. Reinhardt R, Leonard TA. Elife 12 e88210 (2023)
  70. Association of the New Variant Tyr424Asp at TBK1 Gene with Amyotrophic Lateral Sclerosis and Cognitive Decline. Piaceri I, Bessi V, Matà S, Polito C, Tedde A, Berti V, Bagnoli S, Braccia A, Del Mastio M, Pignone AM, Pupi A, Sorbi S, Nacmias B. J Alzheimers Dis 61 41-46 (2018)
  71. An IKBKE variant conferring functional cGAS/STING pathway deficiency and susceptibility to recurrent HSV-2 meningitis. Reyahi A, Studahl M, Skouboe MK, Fruhwürth S, Narita R, Ren F, Bjerhem Viklund M, Iversen MB, Christiansen M, Svensson A, Mogensen TH, Eriksson K, Paludan SR. JCI Insight 8 e173066 (2023)
  72. An Updated Evolutionary and Structural Study of TBK1 Reveals Highly Conserved Motifs as Potential Pharmacological Targets in Neurodegenerative Diseases. Papageorgiou L, Mangana E, Papakonstantinou E, Diakou I, Pierouli K, Dragoumani K, Bacopoulou F, Chrousos GP, Exarchos TP, Vlamos P, Eliopoulos E, Vlachakis D. Adv Exp Med Biol 1423 41-57 (2023)
  73. DTX3L Enhances Type I Interferon Antiviral Response by Promoting the Ubiquitination and Phosphorylation of TBK1. Huang J, Chen Z, Ye Y, Shao Y, Zhu P, Li X, Ma Y, Xu F, Zhou J, Wu M, Gao X, Yang Y, Zhang J, Hao C. J Virol 97 e0068723 (2023)
  74. Frustration analysis of TBK1 missense mutations reported in ALS/FTD and cancer patients. Khatoon F, Kumar V, Anjum F, Shafie A, Adnan M, Hassan MI. 3 Biotech 12 174 (2022)
  75. Mitochondria-associated membrane collapse impairs TBK1-mediated proteostatic stress response in ALS. Watanabe S, Murata Y, Oka Y, Oiwa K, Horiuchi M, Iguchi Y, Komine O, Sobue A, Katsuno M, Ogi T, Yamanaka K. Proc Natl Acad Sci U S A 120 e2315347120 (2023)
  76. NAK-associated protein 1/NAP1 activates TBK1 to ensure accurate mitosis and cytokinesis. Paul S, Sarraf SA, Nam KH, Zavar L, DeFoor N, Biswas SR, Fritsch LE, Yaron TM, Johnson JL, Huntsman EM, Cantley LC, Ordureau A, Pickrell AM. J Cell Biol 223 e202303082 (2024)
  77. Pharmacological inhibition of TBK1/IKKε blunts immunopathology in a murine model of SARS-CoV-2 infection. Ullah TR, Johansen MD, Balka KR, Ambrose RL, Gearing LJ, Roest J, Vivian JP, Sapkota S, Jayasekara WSN, Wenholz DS, Aldilla VR, Zeng J, Miemczyk S, Nguyen DH, Hansbro NG, Venkatraman R, Kang JH, Pang ES, Thomas BJ, Alharbi AS, Rezwan R, O'Keeffe M, Donald WA, Ellyard JI, Wong W, Kumar N, Kile BT, Vinuesa CG, Kelly GE, Laczka OF, Hansbro PM, De Nardo D, Gantier MP. Nat Commun 14 5666 (2023)
  78. SARS-CoV-2 Nsp15 suppresses type I interferon production by inhibiting IRF3 phosphorylation and nuclear translocation. Zhang D, Ji L, Chen X, He Y, Sun Y, Ji L, Zhang T, Shen Q, Wang X, Wang Y, Yang S, Zhang W, Zhou C. iScience 26 107705 (2023)
  79. The TMEM192-mKeima probe specifically assays lysophagy and reveals its initial steps. Shima T, Ogura M, Matsuda R, Nakamura S, Jin N, Yoshimori T, Kuma A. J Cell Biol 222 e202204048 (2023)