› 4clc

X-ray diffraction
2.8Å resolution

Crystal structure of Ybr137w protein

Released:
DOI: 10.2210/pdb4clc/pdb
PDB entry 4clc coloured by chain, front view.
PDB entry 4clc coloured by chain, side view.
PDB entry 4clc coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Structural and functional characterization of ybr137wp implicates its involvement in the targeting of tail-anchored proteins to membranes.
Yeh YH, Lin TW, Li YC, Tung JY, Lin CY, Hsiao CD
Mol Cell Biol 34 4500-12 (2014)
PMID: 25288638

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero decamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153603 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
UPF0303 protein YBR137W Chain: A
Molecule details ›
Chain: A
Length: 179 amino acids
Theoretical weight: 20.5 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P38276 (Residues: 1-179; Coverage: 100%)
Gene names: YBR1013, YBR137W
Sequence domains: Haem degrading protein HbpS-like
Structure domains: Haem-degrading domain
UPF0303 protein YBR137W Chain: B
Molecule details ›
Chain: B
Length: 179 amino acids
Theoretical weight: 20.4 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P38276 (Residues: 1-179; Coverage: 100%)
Gene names: YBR1013, YBR137W
Sequence domains: Haem degrading protein HbpS-like
Structure domains: Haem-degrading domain
UPF0303 protein YBR137W Chain: C
Molecule details ›
Chain: C
Length: 179 amino acids
Theoretical weight: 20.48 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P38276 (Residues: 1-179; Coverage: 100%)
Gene names: YBR1013, YBR137W
Sequence domains: Haem degrading protein HbpS-like
Structure domains: Haem-degrading domain
UPF0303 protein YBR137W Chain: D
Molecule details ›
Chain: D
Length: 179 amino acids
Theoretical weight: 20.48 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P38276 (Residues: 1-179; Coverage: 100%)
Gene names: YBR1013, YBR137W
Sequence domains: Haem degrading protein HbpS-like
Structure domains: Haem-degrading domain
UPF0303 protein YBR137W Chain: E
Molecule details ›
Chain: E
Length: 179 amino acids
Theoretical weight: 20.48 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P38276 (Residues: 1-179; Coverage: 100%)
Gene names: YBR1013, YBR137W
Sequence domains: Haem degrading protein HbpS-like
Structure domains: Haem-degrading domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSRRC BEAMLINE BL13B1
Spacegroup: P3121
Unit cell:
a: 135.254Å b: 135.254Å c: 121.5Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.211 0.207 0.268
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

2 citation in other articles

Structure and Interactions of the TPR Domain of Sgt2 with Yeast Chaperones and Ybr137wp.
Krysztofinska et al. (2017)
1 more

4 mentions without citation

EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde.
Bazurto et al. (2021)
3 more