› 4bum

X-ray diffraction
2.8Å resolution

Crystal structure of the Voltage Dependant Anion Channel 2 from zebrafish.

Released:
DOI: 10.2210/pdb4bum/pdb
PDB 4bum coloured by chain and viewed from the front.
PDB 4bum coloured by chain and viewed from the side.
PDB 4bum coloured by chain and viewed from the top.
Source organism: Danio rerio
Entry authors: Paz A, Schredelseker J, Abramson J

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Voltage-dependent anion-selective channel protein 2 Chain: X
Molecule details ›
Chain: X
Length: 289 amino acids
Theoretical weight: 31.15 KDa
Source organism: Danio rerio
Expression system: Escherichia coli M15
UniProt:
  • Canonical: Q8AWD0 (Residues: 1-283; Coverage: 100%)
Gene names: SO:0001217, vdac2, wu:fa01a08, wu:fa98a10, wu:fb50g11, zgc:55795, zgc:77621
Sequence domains: Eukaryotic porin
Structure domains: Porin

Ligands and Environments

1 bound ligand:
Ligand LDA 1 x LDA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.2
Spacegroup: P3221
Unit cell:
a: 72.47Å b: 72.47Å c: 177.95Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.249 0.246 0.282
Expression system: Escherichia coli M15

Quick links

Citations

22 review citations

MicroED: conception, practice and future opportunities.
Clabbers et al. (2022)
21 more

12 mentions without citation

VDAC2-specific cellular functions and the underlying structure.
Naghdi et al. (2016)
11 more