X-ray diffraction
2.68Å resolution

Designed Phosphodeoxyribosyltransferase


Function and Biology Details

Reaction catalysed:
2-deoxy-D-ribosyl-base(1) + base(2) = 2-deoxy-D-ribosyl-base(2) + base(1) 
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Entry contents:
1 distinct polypeptide molecule
Nucleoside deoxyribosyltransferase Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 157 amino acids
Theoretical weight: 18.02 KDa
Source organism: Lactobacillus leichmannii
Expression system: Escherichia coli
  • Canonical: Q9R5V5 (Residues: 1-157; Coverage: 100%)
Gene name: ntd
Sequence domains: Nucleoside 2-deoxyribosyltransferase
Structure domains: Rossmann fold

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: I213
Unit cell:
a: 218.454Å b: 218.454Å c: 218.454Å
α: 90° β: 90° γ: 90°
R R work R free
0.198 0.195 0.25
Expression system: Escherichia coli