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X-ray structure of cyanide-bound bovine heart cytochrome c oxidase in the fully oxidized state at 2.0 Å resolution.

Yano N, Muramoto K, Mochizuki M, Shinzawa-Itoh K, Yamashita E, Yoshikawa S, Tsukihara T
Acta Crystallogr F Struct Biol Commun 71 726-30 (2015)
Cited: 15 times
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Abstract

The X-ray structure of cyanide-bound bovine heart cytochrome c oxidase in the fully oxidized state was determined at 2.0 Å resolution. The structure reveals that the peroxide that bridges the two metals in the fully oxidized state is replaced by a cyanide ion bound in a nearly symmetric end-on fashion without significantly changing the protein conformation outside the two metal sites.

Articles - 3x2q mentioned but not cited (6)

  1. Isolation of yeast complex IV in native lipid nanodiscs. Smirnova IA, Sjöstrand D, Li F, Björck M, Schäfer J, Östbye H, Högbom M, von Ballmoos C, Lander GC, Ädelroth P, Brzezinski P. Biochim Biophys Acta 1858 2984-2992 (2016)
  2. Long-lived mitochondrial cristae proteins in mouse heart and brain. Bomba-Warczak E, Edassery SL, Hark TJ, Savas JN. J Cell Biol 220 e202005193 (2021)
  3. X-ray structure of cyanide-bound bovine heart cytochrome c oxidase in the fully oxidized state at 2.0 Å resolution. Yano N, Muramoto K, Mochizuki M, Shinzawa-Itoh K, Yamashita E, Yoshikawa S, Tsukihara T. Acta Crystallogr F Struct Biol Commun 71 726-730 (2015)
  4. MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits. Castellana S, Biagini T, Petrizzelli F, Parca L, Panzironi N, Caputo V, Vescovi AL, Carella M, Mazza T. Nucleic Acids Res 49 D1282-D1288 (2021)
  5. X-ray structural analyses of azide-bound cytochrome c oxidases reveal that the H-pathway is critically important for the proton-pumping activity. Shimada A, Hatano K, Tadehara H, Yano N, Shinzawa-Itoh K, Yamashita E, Muramoto K, Tsukihara T, Yoshikawa S. J Biol Chem 293 14868-14879 (2018)
  6. Structural basis of mitochondrial membrane bending by the I-II-III2-IV2 supercomplex. Mühleip A, Flygaard RK, Baradaran R, Haapanen O, Gruhl T, Tobiasson V, Maréchal A, Sharma V, Amunts A. Nature 615 934-938 (2023)


Reviews citing this publication (1)

  1. Proton Pumping and Non-Pumping Terminal Respiratory Oxidases: Active Sites Intermediates of These Molecular Machines and Their Derivatives. Siletsky SA, Borisov VB. Int J Mol Sci 22 10852 (2021)

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  1. Endogenous Carbon Monoxide Signaling Modulates Mitochondrial Function and Intracellular Glucose Utilization: Impact of the Heme Oxygenase Substrate Hemin. Stucki D, Steinhausen J, Westhoff P, Krahl H, Brilhaus D, Massenberg A, Weber APM, Reichert AS, Brenneisen P, Stahl W. Antioxidants (Basel) 9 E652 (2020)
  2. Cardiolipin deficiency causes a dissociation of the b 6 c:caa 3 megacomplex in B. subtilis membranes. García Montes de Oca LY, Cabellos Avelar T, Picón Garrido GI, Chagoya-López A, González de la Vara L, Delgado Buenrostro NL, Chirino-López YI, Gómez-Lojero C, Gutiérrez-Cirlos EB. J Bioenerg Biomembr 48 451-467 (2016)
  3. Letter Modulation of O2 reduction in Saccharomyces cerevisiae mitochondria. Rydström Lundin C, Brzezinski P. FEBS Lett 591 4049-4055 (2017)
  4. Structural basis of mammalian complex IV inhibition by steroids. Di Trani JM, Moe A, Riepl D, Saura P, Kaila VRI, Brzezinski P, Rubinstein JL. Proc Natl Acad Sci U S A 119 e2205228119 (2022)
  5. Binding of exogenous cyanide reveals new active-site states in [FeFe] hydrogenases. Martini MA, Bikbaev K, Pang Y, Lorent C, Wiemann C, Breuer N, Zebger I, DeBeer S, Span I, Bjornsson R, Birrell JA, Rodríguez-Maciá P. Chem Sci 14 2826-2838 (2023)
  6. Cytochrome c oxidase structures suggest a four-state stochastic pump mechanism. Palese LL. Phys Chem Chem Phys 21 4822-4830 (2019)
  7. Characterisation of the Cyanate Inhibited State of Cytochrome c Oxidase. Kruse F, Nguyen AD, Dragelj J, Schlesinger R, Heberle J, Mroginski MA, Weidinger IM. Sci Rep 10 3863 (2020)
  8. Crystallographic cyanide-probing for cytochrome c oxidase reveals structural bases suggesting that a putative proton transfer H-pathway pumps protons. Shimada A, Baba J, Nagao S, Shinzawa-Itoh K, Yamashita E, Muramoto K, Tsukihara T, Yoshikawa S. J Biol Chem 299 105277 (2023)


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