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Crystal structure of JMJD5 catalytic core domain in complex with nickle and alpha-KG

Source organism: Homo sapiens
Biochemical function: not assigned
Biological process: not assigned
Cellular component: not assigned

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EC 1.14.11.73: [Protein]-arginine 3-hydroxylase

Reaction catalysed:
[Protein]-L-arginine + 2-oxoglutarate + O(2) = [protein]-(3R)-3-hydroxy-L-arginine + succinate + CO(2)
Systematic name:
[Protein]-L-arginine,2-oxoglutarate:oxygen oxidoreductase (3R-hydroxylating)

GO terms

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Sequence family

Pfam Protein family (Pfam)
PF13621
Domain description: Cupin-like domain
Occurring in:
  1. Bifunctional peptidase and arginyl-hydroxylase JMJD5
The deposited structure of PDB entry 3uyj contains 2 copies of Pfam domain PF13621 (Cupin-like domain) in Bifunctional peptidase and arginyl-hydroxylase JMJD5. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR003347
Domain description: JmjC domain
Occurring in:
  1. Bifunctional peptidase and arginyl-hydroxylase JMJD5
IPR041667
Domain description: Cupin-like domain 8
Occurring in:
  1. Bifunctional peptidase and arginyl-hydroxylase JMJD5

Structure domain

CATH CATH domain
2.60.120.650
Class: Mainly Beta
Architecture: Sandwich
Topology: Jelly Rolls
Homology: Cupin
Occurring in:
  1. Bifunctional peptidase and arginyl-hydroxylase JMJD5
The deposited structure of PDB entry 3uyj contains 2 copies of CATH domain 2.60.120.650 (Jelly Rolls) in Bifunctional peptidase and arginyl-hydroxylase JMJD5. Showing 1 copy in chain A.

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