› 3up9

X-ray diffraction
2.35Å resolution

Crystal structure of a putative lipoprotein (ACTODO_00931) from Actinomyces odontolyticus ATCC 17982 at 2.35 A resolution

Released:
DOI: 10.2210/pdb3up9/pdb
PDB 3up9 coloured by chain and viewed from the front.
PDB 3up9 coloured by chain and viewed from the side.
PDB 3up9 coloured by chain and viewed from the top.
Source organism: Schaalia odontolytica ATCC 17982
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lipoprotein Chain: A
Molecule details ›
Chain: A
Length: 245 amino acids
Theoretical weight: 26.45 KDa
Source organism: Schaalia odontolytica ATCC 17982
Expression system: Escherichia coli
UniProt:
  • Canonical: A7BBB2 (Residues: 33-277; Coverage: 100%)
Gene name: ACTODO_00931
Sequence domains: NlpA lipoprotein
Structure domains: Periplasmic binding protein-like II

Ligands and Environments

3 bound ligands:
Ligand MSE 1 x MSE
Ligand PG4 4 x PG4
Ligand PE4 1 x PE4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: I41
Unit cell:
a: 95.917Å b: 95.917Å c: 93.781Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.159 0.156 0.205
Expression system: Escherichia coli

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