› 3u54

X-ray diffraction
2.35Å resolution

Crystal structure (Type-1) of SAICAR synthetase from Pyrococcus horikoshii OT3

Released:
DOI: 10.2210/pdb3u54/pdb
PDB entry 3u54 coloured by chain, front view.
PDB entry 3u54 coloured by chain, side view.
PDB entry 3u54 coloured by chain, top view.
Source organism: Pyrococcus horikoshii OT3
Primary publication:
Structure of SAICAR synthetase from Pyrococcus horikoshii OT3: insights into thermal stability.
Manjunath K, Kanaujia SP, Kanagaraj S, Jeyakanthan J, Sekar K
Int J Biol Macromol 53 7-19 (2013)
PMID: 23137517

Function and Biology Details

Reaction catalysed: 
ATP + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + L-aspartate = ADP + phosphate + (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assemblies composition:
homo hexamer
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-129650 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phosphoribosylaminoimidazole-succinocarboxamide synthase Chains: A, B
Molecule details ›
Chains: A, B
Length: 238 amino acids
Theoretical weight: 27.71 KDa
Source organism: Pyrococcus horikoshii OT3
Expression system: Escherichia coli
UniProt:
  • Canonical: O57978 (Residues: 1-238; Coverage: 100%)
Gene names: PH0239, purC
Sequence domains: SAICAR synthetase
Structure domains:

Ligands and Environments

4 bound ligands:
Ligand BU1 1 x BU1
Ligand SO4 4 x SO4
Ligand CD 12 x CD
Ligand ACT 1 x ACT
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: BRUKER AXS MICROSTAR
Spacegroup: R3
Unit cell:
a: 95.42Å b: 95.42Å c: 148.631Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.237 0.235 0.286
Expression system: Escherichia coli

Quick links

Citations

5 citation in other articles

Structures of SAICAR synthetase (PurC) from Streptococcus pneumoniae with ADP, Mg2+, AIR and Asp.
Wolf et al. (2014)
4 more