› 3u07

X-ray diffraction
2.08Å resolution

Crystal Structure of the VPA0106 protein from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR106.

Released:
DOI: 10.2210/pdb3u07/pdb
PDB entry 3u07 coloured by chain, front view.
PDB entry 3u07 coloured by chain, side view.
PDB entry 3u07 coloured by chain, top view.
Source organism: Vibrio parahaemolyticus
Entry authors: Vorobiev S, Neely H, Seetharaman J, Patel P, Xiao R, Ciccosanti C, Wang H, Everett JK, Nair R, Acton TB, Rost B, Montelione GT, Tong L, Hunt JF, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183330 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF1254 domain-containing protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 443 amino acids
Theoretical weight: 51.15 KDa
Source organism: Vibrio parahaemolyticus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q87JZ2 (Residues: 1-435; Coverage: 100%)
Gene name: VPA0106
Sequence domains:
Structure domains: Jelly Rolls

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 54 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: P1
Unit cell:
a: 51.445Å b: 96.32Å c: 100.54Å
α: 60.61° β: 80.87° γ: 86.55°
R-values:
R R work R free
0.195 0.194 0.216
Expression system: Escherichia coli BL21(DE3)

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