› 3tva

X-ray diffraction
2.15Å resolution

Crystal Structure of Xylose isomerase domain protein from Planctomyces limnophilus

Released:
DOI: 10.2210/pdb3tva/pdb
PDB entry 3tva coloured by chain, front view.
PDB entry 3tva coloured by chain, side view.
PDB entry 3tva coloured by chain, top view.
Source organism: Planctopirus limnophila DSM 3776
Entry authors: Kim Y, Wu R, Bearden J, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112742 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Xylose isomerase-like TIM barrel domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 290 amino acids
Theoretical weight: 31.91 KDa
Source organism: Planctopirus limnophila DSM 3776
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: D5SXE5 (Residues: 1-287; Coverage: 100%)
Gene name: Plim_1682
Sequence domains: Xylose isomerase-like TIM barrel
Structure domains: Divalent-metal-dependent TIM barrel enzymes

Ligands and Environments

3 bound ligands:
Ligand MG 2 x MG
Ligand GOL 4 x GOL
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P4122
Unit cell:
a: 105.324Å b: 105.324Å c: 178.936Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.169 0.168 0.193
Expression system: Escherichia coli BL21(DE3)

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