› 3tov

X-ray diffraction
2.98Å resolution

The crystal structure of the glycosyl transferase family 9 from Veillonella parvula DSM 2008

Released:
DOI: 10.2210/pdb3tov/pdb
PDB entry 3tov coloured by chain, front view.
PDB entry 3tov coloured by chain, side view.
PDB entry 3tov coloured by chain, top view.
Source organism: Veillonella parvula DSM 2008
Entry authors: Tan K, Marshall N, Clancy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112259 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycosyl transferase family 9 Chains: A, B
Molecule details ›
Chains: A, B
Length: 349 amino acids
Theoretical weight: 39.92 KDa
Source organism: Veillonella parvula DSM 2008
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: D1BM34 (Residues: 1-346; Coverage: 100%)
Gene name: Vpar_0760
Sequence domains: Glycosyltransferase family 9 (heptosyltransferase)
Structure domains: Glycogen Phosphorylase B;

Ligands and Environments

1 bound ligand:
Ligand SO4 11 x SO4
1 modified residue:
Ligand MSE 26 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 78.708Å b: 95.394Å c: 121.494Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.176 0.171 0.267
Expression system: Escherichia coli BL21(DE3)

Quick links