› 3tov

X-ray diffraction
2.98Å resolution

The crystal structure of the glycosyl transferase family 9 from Veillonella parvula DSM 2008

Released:
DOI: 10.2210/pdb3tov/pdb
PDB 3tov coloured by chain and viewed from the front.
PDB 3tov coloured by chain and viewed from the side.
PDB 3tov coloured by chain and viewed from the top.
Source organism: Veillonella parvula DSM 2008
Entry authors: Tan K, Marshall N, Clancy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycosyl transferase family 9 Chains: A, B
Molecule details ›
Chains: A, B
Length: 349 amino acids
Theoretical weight: 39.92 KDa
Source organism: Veillonella parvula DSM 2008
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: D1BM34 (Residues: 1-346; Coverage: 100%)
Gene name: Vpar_0760
Sequence domains: Glycosyltransferase family 9 (heptosyltransferase)
Structure domains: Glycogen Phosphorylase B;

Ligands and Environments

1 bound ligand:
Ligand SO4 11 x SO4
1 modified residue:
Ligand MSE 26 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 78.708Å b: 95.394Å c: 121.494Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.176 0.171 0.267
Expression system: Escherichia coli BL21(DE3)

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