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Bd1817, a HDG"Y"P protein from Bdellovibrio bacteriovorus

X-ray diffraction
1.28Å resolution
PDB entry 3tm8 coloured by chain, front view.
PDB entry 3tm8 coloured by chain, side view.
PDB entry 3tm8 coloured by chain, top view.
Source organism: Bdellovibrio bacteriovorus HD100
Assembly composition:
monomeric (preferred)
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1
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Assembly Name: HD-GYP domain-containing protein
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Multimeric state: monomeric
Accessible surface area: 14333.18 Å2
Buried surface area: 1058.91 Å2
Dissociation area: 136.2 Å2
Dissociation energy (ΔGdiss): -3.52 kcal/mol
Dissociation entropy (TΔSdiss): 0.22 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-179896
Assembly 2 (preferred)
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Assembly Name: HD-GYP domain-containing protein
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Multimeric state: monomeric
Accessible surface area: 14052.38 Å2
Buried surface area: 1202.04 Å2
Dissociation area: 120.29 Å2
Dissociation energy (ΔGdiss): -3.66 kcal/mol
Dissociation entropy (TΔSdiss): -0.26 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-179896

Macromolecules

HD-GYP domain-containing protein
Chains: A, B
Length: 328 amino acids
Theoretical weight: 37.01 KDa
Source organism: Bdellovibrio bacteriovorus HD100
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q6MM30 (Residues: 1-308; Coverage: 100%)
Gene name: Bd1817
Pfam: HD domain
InterPro:
CATH: Hypothetical protein af1432
HD-GYP domain-containing protein in PDB entry 3tm8, assembly 2, front view.
HD-GYP domain-containing protein in PDB entry 3tm8, assembly 2, side view.
HD-GYP domain-containing protein in PDB entry 3tm8, assembly 2, top view.
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