› 3tm8

X-ray diffraction
1.28Å resolution

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-179896 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
HD-GYP domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 328 amino acids
Theoretical weight: 37.01 KDa
Source organism: Bdellovibrio bacteriovorus HD100
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q6MM30 (Residues: 1-308; Coverage: 100%)
Gene name: Bd1817
Sequence domains: HD domain
Structure domains: Hypothetical protein af1432

Ligands and Environments

4 bound ligands:
Ligand PO4 2 x PO4
Ligand FE 4 x FE
Ligand DMS 3 x DMS
Ligand EDO 2 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: P21
Unit cell:
a: 47.17Å b: 79.84Å c: 84.75Å
α: 90° β: 95.99° γ: 90°
R-values:
R R work R free
0.167 0.165 0.196
Expression system: Escherichia coli BL21

Quick links

Citations

5 review citations

Cyclic di-GMP signalling and the regulation of bacterial virulence.
Ryan RP. (2013)
4 more

12 mentions without citation

Cyclic di-GMP: the first 25 years of a universal bacterial second messenger.
Römling et al. (2013)
11 more