3t27 Citations

The use of trimethylamine N-oxide as a primary precipitating agent and related methylamine osmolytes as cryoprotective agents for macromolecular crystallography.

Acta Crystallogr D Biol Crystallogr 68 69-81 (2012)
Related entries: 3t25, 3t26, 3t28, 3t29, 3t2a, 3t2h, 3t2i, 3t2j

Cited: 12 times
EuropePMC logo PMID: 22194335

Abstract

Both crystallization and cryoprotection are often bottlenecks for high-resolution X-ray structure determination of macromolecules. Methylamine osmolytes are known stabilizers of protein structure. One such osmolyte, trimethylamine N-oxide (TMAO), has seen occasional use as an additive to improve macromolecular crystal quality and has recently been shown to be an effective cryoprotective agent for low-temperature data collection. Here, TMAO and the related osmolytes sarcosine and betaine are investigated as primary precipitating agents for protein crystal growth. Crystallization experiments were undertaken with 14 proteins. Using TMAO, seven proteins crystallized in a total of 13 crystal forms, including a new tetragonal crystal form of trypsin. The crystals diffracted well, and eight of the 13 crystal forms could be effectively cryocooled as grown with TMAO as an in situ cryoprotective agent. Sarcosine and betaine produced crystals of four and two of the 14 proteins, respectively. In addition to TMAO, sarcosine and betaine were effective post-crystallization cryoprotective agents for two different crystal forms of thermolysin. Precipitation reactions of TMAO with several transition-metal ions (Fe(3+), Co(2+), Cu(2+) and Zn(2+)) did not occur with sarcosine or betaine and were inhibited for TMAO at lower pH. Structures of proteins from TMAO-grown crystals and from crystals soaked in TMAO, sarcosine or betaine were determined, showing osmolyte binding in five of the 12 crystals tested. When an osmolyte was shown to bind, it did so near the protein surface, interacting with water molecules, side chains and backbone atoms, often at crystal contacts.

Articles - 3t27 mentioned but not cited (2)

  1. The use of trimethylamine N-oxide as a primary precipitating agent and related methylamine osmolytes as cryoprotective agents for macromolecular crystallography. Marshall H, Venkat M, Seng NS, Cahn J, Juers DH. Acta Crystallogr D Biol Crystallogr 68 69-81 (2012)
  2. Antibiofilm Activity of Weissella spp. and Bacillus coagulans Isolated from Equine Skin against Staphylococcus aureus. Styková E, Nemcová R, Maďar M, Bujňáková D, Mucha R, Gancarčíková S, Requena Domenech F. Life (Basel) 12 2135 (2022)


Reviews citing this publication (1)

  1. The impact of structural biology on alkaloid biosynthesis research. Panjikar S, Stoeckigt J, O'Connor S, Warzecha H. Nat Prod Rep 29 1176-1200 (2012)

Articles citing this publication (9)

  1. Structures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer. Ross B, Krapp S, Augustin M, Kierfersauer R, Arciniega M, Geiss-Friedlander R, Huber R. Proc Natl Acad Sci U S A 115 E1437-E1445 (2018)
  2. 4S-Hydroxylation of Insulin at ProB28 Accelerates Hexamer Dissociation and Delays Fibrillation. Lieblich SA, Fang KY, Cahn JKB, Rawson J, LeBon J, Ku HT, Tirrell DA. J Am Chem Soc 139 8384-8387 (2017)
  3. IgG Fab fragments forming bivalent complexes by a conformational mechanism that is reversible by osmolytes. Nelson AD, Hoffmann MM, Parks CA, Dasari S, Schrum AG, Gil D. J Biol Chem 287 42936-42950 (2012)
  4. Efficient cryoprotection of macromolecular crystals using vapor diffusion of volatile alcohols. Farley C, Juers DH. J Struct Biol 188 102-106 (2014)
  5. Nanomedical Relevance of the Intermolecular Interaction Dynamics-Examples from Lysozymes and Insulins. Zhang R, Zhang N, Mohri M, Wu L, Eckert T, Krylov VB, Antosova A, Ponikova S, Bednarikova Z, Markart P, Günther A, Norden B, Billeter M, Schauer R, Scheidig AJ, Ratha BN, Bhunia A, Hesse K, Enani MA, Steinmeyer J, Petridis AK, Kozar T, Gazova Z, Nifantiev NE, Siebert HC. ACS Omega 4 4206-4220 (2019)
  6. Investigation into the binding of dyes within protein crystals. McPherson A, Larson SB. Acta Crystallogr F Struct Biol Commun 74 593-602 (2018)
  7. Effect of TMAO and betaine on the energy landscape of photosystem I. Nieder JB, Hussels M, Bittl R, Brecht M. Biochim Biophys Acta 1837 849-856 (2014)
  8. A drug-discovery-oriented non-invasive protocol for protein crystal cryoprotection by dehydration, with application for crystallization screening. Bellini D. J Appl Crystallogr 55 370-379 (2022)
  9. Single-support serial isomorphous replacement phasing. Foos N, Rizk M, Nanao MH. Acta Crystallogr D Struct Biol 78 716-724 (2022)