› 3npf

X-ray diffraction
1.72Å resolution

Crystal structure of a putative dipeptidyl-peptidase VI (BACOVA_00612) from Bacteroides ovatus at 1.72 A resolution

Released:
DOI: 10.2210/pdb3npf/pdb
PDB entry 3npf coloured by chain, front view.
PDB entry 3npf coloured by chain, side view.
PDB entry 3npf coloured by chain, top view.
Source organism: Bacteroides ovatus ATCC 8483
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108301 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NlpC/P60 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 306 amino acids
Theoretical weight: 35.16 KDa
Source organism: Bacteroides ovatus ATCC 8483
Expression system: Escherichia coli
UniProt:
  • Canonical: A7LS31 (Residues: 22-326; Coverage: 100%)
Gene name: BACOVA_00612
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CL 2 x CL
Ligand GOL 11 x GOL
2 modified residues:
Ligand MSE 20 x MSE
Ligand CSA 2 x CSA

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P212121
Unit cell:
a: 60.136Å b: 62.495Å c: 156.809Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.142 0.141 0.171
Expression system: Escherichia coli

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