› 3mjb

X-ray diffraction
2.8Å resolution

Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to sulfate

Released:
DOI: 10.2210/pdb3mjb/pdb
PDB 3mjb coloured by chain and viewed from the front.
PDB 3mjb coloured by chain and viewed from the side.
PDB 3mjb coloured by chain and viewed from the top.
Source organism: Synthetic construct
Primary publication:
Identification and characterization of anion binding sites in RNA.
Kieft JS, Chase E, Costantino DA, Golden BL
RNA 16 1118-23 (2010)
PMID: 20410239

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct RNA molecules
Macromolecules (2 distinct):
Domain 3 of the cricket paralysis virus intergenic region IRES RNA Chain: A
Molecule details ›
Chain: A
Length: 29 nucleotides
Theoretical weight: 9.33 KDa
Source organism: Synthetic construct
Expression system: Not provided
RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3') Chain: B
Molecule details ›
Chain: B
Length: 14 nucleotides
Theoretical weight: 4.42 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand SO4 4 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.1
Spacegroup: P41212
Unit cell:
a: 58.94Å b: 58.94Å c: 99.37Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.242 0.242 0.276
Expression system: Not provided

Quick links

Citations

2 review citations

Neuroepigenetic Mechanisms of Action of Ultrashort Peptides in Alzheimer's Disease.
Ilina et al. (2022)
1 more

1 mention without citation

Identification and characterization of anion binding sites in RNA.
Kieft et al. (2010)