› 3k0y

X-ray diffraction
2.16Å resolution

Crystal structure of Putative TOXIN related protein (YP_001303978.1) from Parabacteroides distasonis ATCC 8503 at 2.16 A resolution

Released:
DOI: 10.2210/pdb3k0y/pdb
PDB entry 3k0y coloured by chain, front view.
PDB entry 3k0y coloured by chain, side view.
PDB entry 3k0y coloured by chain, top view.
Source organism: Parabacteroides distasonis ATCC 8503
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107947 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NigD-like protein Chain: A
Molecule details ›
Chain: A
Length: 229 amino acids
Theoretical weight: 25.79 KDa
Source organism: Parabacteroides distasonis ATCC 8503
Expression system: Escherichia coli
UniProt:
  • Canonical: A6LF92 (Residues: 26-253; Coverage: 100%)
Gene name: BDI_2637
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand 2PE 2 x 2PE
1 modified residue:
Ligand MSE 3 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2, SSRL BEAMLINE BL11-1
Spacegroup: P3121
Unit cell:
a: 71.722Å b: 71.722Å c: 102.566Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.205 0.203 0.235
Expression system: Escherichia coli

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