› 3ju0

X-ray diffraction
1.6Å resolution

Structure of the arm-type binding domain of HAI7 integrase

Released:
DOI: 10.2210/pdb3ju0/pdb
PDB entry 3ju0 coloured by chain, front view.
PDB entry 3ju0 coloured by chain, side view.
PDB entry 3ju0 coloured by chain, top view.
Source organism: Pectobacterium atrosepticum
Primary publication:
Structures of the arm-type binding domains of HPI and HAI7 integrases.
Szwagierczak A, Antonenka U, Popowicz GM, Sitar T, Holak TA, Rakin A
J Biol Chem 284 31664-71 (2009)
PMID: 19737930

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-179499 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Tyr recombinase domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 108 amino acids
Theoretical weight: 12.53 KDa
Source organism: Pectobacterium atrosepticum
Expression system: Escherichia coli
UniProt:
  • Canonical: Q6D6K1 (Residues: 1-100; Coverage: 24%)
Gene names: ECA1679, intB
Sequence domains: Arm DNA-binding domain
Structure domains: Integrase, DNA-binding domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P65
Unit cell:
a: 52.53Å b: 52.53Å c: 79.47Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.151 0.148 0.212
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Genome dynamics and its impact on evolution of Escherichia coli.
Dobrindt et al. (2010)
1 other article

2 mentions without citation

Characterization and induction of prophages in human gut-associated Bifidobacterium hosts.
Mavrich et al. (2018)
1 more