› 3jr7

X-ray diffraction
2Å resolution

The crystal structure of the protein of DegV family COG1307 with unknown function from Ruminococcus gnavus ATCC 29149

Released:
DOI: 10.2210/pdb3jr7/pdb
PDB entry 3jr7 coloured by chain, front view.
PDB entry 3jr7 coloured by chain, side view.
PDB entry 3jr7 coloured by chain, top view.
Source organism: [Ruminococcus] gnavus ATCC 29149
Entry authors: Zhang R, Hatzos C, Clancy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108238 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
EDD domain protein, DegV family Chains: A, B
Molecule details ›
Chains: A, B
Length: 298 amino acids
Theoretical weight: 33.63 KDa
Source organism: [Ruminococcus] gnavus ATCC 29149
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: A7B6P0 (Residues: 36-332; Coverage: 90%)
Gene name: RUMGNA_03254
Sequence domains: Uncharacterised protein, DegV family COG1307
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand PG6 2 x PG6
Ligand PO4 2 x PO4
Ligand NA 4 x NA
1 modified residue:
Ligand MSE 16 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P3121
Unit cell:
a: 96.899Å b: 96.899Å c: 159.921Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.164 0.162 0.208
Expression system: Escherichia coli BL21

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