Reviews - 3jco mentioned but not cited (1)
- Functional Differences between Proteasome Subtypes. Abi Habib J, Lesenfants J, Vigneron N, Van den Eynde BJ. Cells 11 421 (2022)
Articles - 3jco mentioned but not cited (2)
- Structure of an endogenous yeast 26S proteasome reveals two major conformational states. Luan B, Huang X, Wu J, Mei Z, Wang Y, Xue X, Yan C, Wang J, Finley DJ, Shi Y, Wang F. Proc Natl Acad Sci U S A 113 2642-2647 (2016)
- Flexible Fitting of Atomic Models into Cryo-EM Density Maps Guided by Helix Correspondences. Dou H, Burrows DW, Baker ML, Ju T. Biophys J 112 2479-2493 (2017)
Reviews citing this publication (18)
- Structure and Function of the 26S Proteasome. Bard JAM, Goodall EA, Greene ER, Jonsson E, Dong KC, Martin A. Annu Rev Biochem 87 697-724 (2018)
- Proteasome Structure and Assembly. Budenholzer L, Cheng CL, Li Y, Hochstrasser M. J Mol Biol 429 3500-3524 (2017)
- The life cycle of the 26S proteasome: from birth, through regulation and function, and onto its death. Livneh I, Cohen-Kaplan V, Cohen-Rosenzweig C, Avni N, Ciechanover A. Cell Res 26 869-885 (2016)
- Cryo-EM in drug discovery: achievements, limitations and prospects. Renaud JP, Chari A, Ciferri C, Liu WT, Rémigy HW, Stark H, Wiesmann C. Nat Rev Drug Discov 17 471-492 (2018)
- Ubiquitin recognition by the proteasome. Saeki Y. J Biochem 161 113-124 (2017)
- Recognition of Client Proteins by the Proteasome. Yu H, Matouschek A. Annu Rev Biophys 46 149-173 (2017)
- Meddling with Fate: The Proteasomal Deubiquitinating Enzymes. de Poot SAH, Tian G, Finley D. J Mol Biol 429 3525-3545 (2017)
- Proteasomes and Several Aspects of Their Heterogeneity Relevant to Cancer. Morozov AV, Karpov VL. Front Oncol 9 761 (2019)
- Structure, Dynamics and Function of the 26S Proteasome. Mao Y. Subcell Biochem 96 1-151 (2021)
- Proteasome in action: substrate degradation by the 26S proteasome. Sahu I, Glickman MH. Biochem Soc Trans 49 629-644 (2021)
- Proteasome interaction with ubiquitinated substrates: from mechanisms to therapies. Chen X, Htet ZM, López-Alfonzo E, Martin A, Walters KJ. FEBS J 288 5231-5251 (2021)
- Integrative Structure Modeling: Overview and Assessment. Braitbard M, Schneidman-Duhovny D, Kalisman N. Annu Rev Biochem 88 113-135 (2019)
- Proteasome dynamics between proliferation and quiescence stages of Saccharomyces cerevisiae. Yedidi RS, Fatehi AK, Enenkel C. Crit Rev Biochem Mol Biol 51 497-512 (2016)
- Proteasome substrate receptors and their therapeutic potential. Osei-Amponsa V, Walters KJ. Trends Biochem Sci 47 950-964 (2022)
- USP13: Multiple Functions and Target Inhibition. Li X, Yang G, Zhang W, Qin B, Ye Z, Shi H, Zhao X, Chen Y, Song B, Mei Z, Zhao Q, Wang F. Front Cell Dev Biol 10 875124 (2022)
- POH1/Rpn11/PSMD14: a journey from basic research in fission yeast to a prognostic marker and a druggable target in cancer cells. Spataro V, Buetti-Dinh A. Br J Cancer 127 788-799 (2022)
- The Cryo-EM Effect: Structural Biology of Neurodegenerative Disease Proteostasis Factors. Creekmore BC, Chang YW, Lee EB. J Neuropathol Exp Neurol 80 494-513 (2021)
- To Kill or to Be Killed: How Does the Battle between the UPS and Autophagy Maintain the Intracellular Homeostasis in Eukaryotes? Yu P, Hua Z. Int J Mol Sci 24 2221 (2023)
Articles citing this publication (30)
- A common mechanism of proteasome impairment by neurodegenerative disease-associated oligomers. Thibaudeau TA, Anderson RT, Smith DM. Nat Commun 9 1097 (2018)
- Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome. Dong Y, Zhang S, Wu Z, Li X, Wang WL, Zhu Y, Stoilova-McPhie S, Lu Y, Finley D, Mao Y. Nature 565 49-55 (2019)
- An atomic structure of the human 26S proteasome. Huang X, Luan B, Wu J, Shi Y. Nat Struct Mol Biol 23 778-785 (2016)
- Structure of the human 26S proteasome at a resolution of 3.9 Å. Schweitzer A, Aufderheide A, Rudack T, Beck F, Pfeifer G, Plitzko JM, Sakata E, Schulten K, Förster F, Baumeister W. Proc Natl Acad Sci U S A 113 7816-7821 (2016)
- Structural basis for dynamic regulation of the human 26S proteasome. Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley DJ, Kirschner MW, Mao Y. Proc Natl Acad Sci U S A 113 12991-12996 (2016)
- Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Förster F, Schulten K, Baumeister W, Sakata E. Proc Natl Acad Sci U S A 114 1305-1310 (2017)
- The proteasome 19S cap and its ubiquitin receptors provide a versatile recognition platform for substrates. Martinez-Fonts K, Davis C, Tomita T, Elsasser S, Nager AR, Shi Y, Finley D, Matouschek A. Nat Commun 11 477 (2020)
- Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome. Wang X, Cimermancic P, Yu C, Schweitzer A, Chopra N, Engel JL, Greenberg C, Huszagh AS, Beck F, Sakata E, Yang Y, Novitsky EJ, Leitner A, Nanni P, Kahraman A, Guo X, Dixon JE, Rychnovsky SD, Aebersold R, Baumeister W, Sali A, Huang L. Mol Cell Proteomics 16 840-854 (2017)
- Structural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome. Zhu Y, Wang WL, Yu D, Ouyang Q, Lu Y, Mao Y. Nat Commun 9 1360 (2018)
- High-resolution cryo-EM structure of the proteasome in complex with ADP-AlFx. Ding Z, Fu Z, Xu C, Wang Y, Wang Y, Li J, Kong L, Chen J, Li N, Zhang R, Cong Y. Cell Res 27 373-385 (2017)
- High-density chemical cross-linking for modeling protein interactions. Mintseris J, Gygi SP. Proc Natl Acad Sci U S A 117 93-102 (2020)
- Polyubiquitin-Photoactivatable Crosslinking Reagents for Mapping Ubiquitin Interactome Identify Rpn1 as a Proteasome Ubiquitin-Associating Subunit. Chojnacki M, Mansour W, Hameed DS, Singh RK, El Oualid F, Rosenzweig R, Nakasone MA, Yu Z, Glaser F, Kay LE, Fushman D, Ovaa H, Glickman MH. Cell Chem Biol 24 443-457.e6 (2017)
- Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle. Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y. Mol Cell 67 322-333.e6 (2017)
- Conformational switching in the coiled-coil domains of a proteasomal ATPase regulates substrate processing. Snoberger A, Brettrager EJ, Smith DM. Nat Commun 9 2374 (2018)
- Nucleotide-dependent switch in proteasome assembly mediated by the Nas6 chaperone. Li F, Tian G, Langager D, Sokolova V, Finley D, Park S. Proc Natl Acad Sci U S A 114 1548-1553 (2017)
- 20S Proteasome as a Drug Target in Trichomonas vaginalis. O'Donoghue AJ, Bibo-Verdugo B, Miyamoto Y, Wang SC, Yang JZ, Zuill DE, Matsuka S, Jiang Z, Almaliti J, Caffrey CR, Gerwick WH, Eckmann L. Antimicrob Agents Chemother 63 e00448-19 (2019)
- Mycobacterium tuberculosis proteasomal ATPase Mpa has a β-grasp domain that hinders docking with the proteasome core protease. Wu Y, Hu K, Li D, Bai L, Yang S, Jastrab JB, Xiao S, Hu Y, Zhang S, Darwin KH, Wang T, Li H. Mol Microbiol 105 227-241 (2017)
- Mutant thermal proteome profiling for characterization of missense protein variants and their associated phenotypes within the proteome. Peck Justice SA, Barron MP, Qi GD, Wijeratne HRS, Victorino JF, Simpson ER, Vilseck JZ, Wijeratne AB, Mosley AL. J Biol Chem 295 16219-16238 (2020)
- Structural Insight into Ubiquitin-Like Protein Recognition and Oligomeric States of JAMM/MPN+ Proteases. Cao S, Engilberge S, Girard E, Gabel F, Franzetti B, Maupin-Furlow JA. Structure 25 823-833.e6 (2017)
- An Allosteric Interaction Network Promotes Conformation State-Dependent Eviction of the Nas6 Assembly Chaperone from Nascent 26S Proteasomes. Nemec AA, Peterson AK, Warnock JL, Reed RG, Tomko RJ. Cell Rep 26 483-495.e5 (2019)
- Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome. Chen X, Dorris Z, Shi D, Huang RK, Khant H, Fox T, de Val N, Williams D, Zhang P, Walters KJ. Structure 28 1206-1217.e4 (2020)
- Proteome plasticity in response to persistent environmental change. Domnauer M, Zheng F, Li L, Zhang Y, Chang CE, Unruh JR, Conkright-Fincham J, McCroskey S, Florens L, Zhang Y, Seidel C, Fong B, Schilling B, Sharma R, Ramanathan A, Si K, Zhou C. Mol Cell 81 3294-3309.e12 (2021)
- A CRISPR Interference Screen of Essential Genes Reveals that Proteasome Regulation Dictates Acetic Acid Tolerance in Saccharomyces cerevisiae. Mukherjee V, Lind U, St Onge RP, Blomberg A, Nygård Y. mSystems 6 e0041821 (2021)
- Inactive USP14 and inactive UCHL5 cause accumulation of distinct ubiquitinated proteins in mammalian cells. Chadchankar J, Korboukh V, Conway LC, Wobst HJ, Walker CA, Doig P, Jacobsen SJ, Brandon NJ, Moss SJ, Wang Q. PLoS One 14 e0225145 (2019)
- Structure of the reduced microsporidian proteasome bound by PI31-like peptides in dormant spores. Jespersen N, Ehrenbolger K, Winiger RR, Svedberg D, Vossbrinck CR, Barandun J. Nat Commun 13 6962 (2022)
- Proteasomal deubiquitinase UCH37 inhibits degradation of β-catenin and promotes cell proliferation and motility. Li Z, Zhou L, Jiang T, Fan L, Liu X, Qiu X. Acta Biochim Biophys Sin (Shanghai) 51 277-284 (2019)
- Proteasome Inhibition Is an Effective Treatment Strategy for Microsporidia Infection in Honey Bees. Huntsman EM, Cho RM, Kogan HV, McNamara-Bordewick NK, Tomko RJ, Snow JW. Biomolecules 11 1600 (2021)
- Assembly checkpoint of the proteasome regulatory particle is activated by coordinated actions of proteasomal ATPase chaperones. Nahar A, Sokolova V, Sekaran S, Orth JD, Park S. Cell Rep 39 110918 (2022)
- Engineered disulfide crosslinking to measure conformational changes in the 26S proteasome. Reed RG, Tomko RJ. Methods Enzymol 619 145-159 (2019)
- The penultimate step of proteasomal ATPase assembly is mediated by a switch dependent on the chaperone Nas2. Sekaran S, Park S. J Biol Chem 299 102870 (2023)