› 3jbm

Electron Microscopy
3.9Å resolution

Electron cryo-microscopy of a virus-like particle of orange-spotted grouper nervous necrosis virus

Released:
DOI: 10.2210/pdb3jbm/pdb
PDB entry 3jbm coloured by chain, front view.
PDB entry 3jbm coloured by chain, side view.
PDB entry 3jbm coloured by chain, top view.
Source organism: Orange-spotted grouper nervous necrosis virus
Primary publication:
Structural analysis and insertion study reveal the ideal sites for surface displaying foreign peptides on a betanodavirus-like particle.
Xie J, Li K, Gao Y, Huang R, Lai Y, Shi Y, Yang S, Zhu G, Zhang Q, He J
Vet Res 47 16 (2016)
PMID: 26754256
Related structures: EMD-6453

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-103522 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Virus-like particle of orange-spotted grouper nervous necrosis virus Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 338 amino acids
Theoretical weight: 37.1 KDa
Source organism: Orange-spotted grouper nervous necrosis virus
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A1L1QJU5 (Residues: 1-338; Coverage: 100%)
Sequence domains: nodavirus capsid protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.9Å
Relevant EMDB volumes: EMD-6453
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Biological cryo-electron microscopy in China.
Wang et al. (2017)
9 other articles

4 mentions without citation

Structural analysis and insertion study reveal the ideal sites for surface displaying foreign peptides on a betanodavirus-like particle.
Xie et al. (2016)
3 more