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Leishmania tarentolae Mitonchondrial Ribosome small subunit

Electron Microscopy
14.1Å resolution
PDB entry 3iy8 coloured by chain, front view.
PDB entry 3iy8 coloured by chain, side view.
PDB entry 3iy8 coloured by chain, top view.
Source organism: Escherichia coli K-12
Assembly composition:
hetero undecamer (preferred)
Entry contents: 10 distinct polypeptide molecules
1 distinct RNA molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Small ribosomal protein
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Multimeric state: hetero undecamer
PDBe Complex ID: PDB-CPX-199603

Macromolecules

Small ribosomal subunit protein uS5
Chain: E
Length: 150 amino acids
Theoretical weight: 15.8 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7W1 (Residues: 10-159; Coverage: 90%)
Gene names: JW3265, b3303, rpsE, spc
Pfam:
InterPro:
Small ribosomal subunit protein uS5 in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein uS5 in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein uS5 in PDB entry 3iy8, assembly 1, top view.
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Small ribosomal subunit protein bS6, non-modified isoform
Chain: F
Length: 100 amino acids
Theoretical weight: 11.67 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P02358 (Residues: 1-100; Coverage: 74%)
Gene names: JW4158, b4200, rpsF
Pfam: Ribosomal protein S6
InterPro:
Small ribosomal subunit protein bS6, non-modified isoform in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein bS6, non-modified isoform in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein bS6, non-modified isoform in PDB entry 3iy8, assembly 1, top view.
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Small ribosomal subunit protein uS8
Chain: H
Length: 129 amino acids
Theoretical weight: 14.02 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7W7 (Residues: 2-130; Coverage: 99%)
Gene names: JW3268, b3306, rpsH
Pfam: Ribosomal protein S8
InterPro:
Small ribosomal subunit protein uS8 in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein uS8 in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein uS8 in PDB entry 3iy8, assembly 1, top view.
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Small ribosomal subunit protein uS9
Chain: I
Length: 127 amino acids
Theoretical weight: 14.55 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7X3 (Residues: 4-130; Coverage: 98%)
Gene names: JW3199, b3230, rpsI
Pfam: Ribosomal protein S9/S16
InterPro:
Small ribosomal subunit protein uS9 in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein uS9 in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein uS9 in PDB entry 3iy8, assembly 1, top view.
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Small ribosomal subunit protein uS11
Chain: K
Length: 117 amino acids
Theoretical weight: 12.49 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7R9 (Residues: 13-129; Coverage: 91%)
Gene names: JW3259, b3297, rpsK
Pfam: Ribosomal protein S11
InterPro:
Small ribosomal subunit protein uS11 in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein uS11 in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein uS11 in PDB entry 3iy8, assembly 1, top view.
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Small ribosomal subunit protein uS12
Chain: L
Length: 123 amino acids
Theoretical weight: 13.64 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7S3 (Residues: 2-124; Coverage: 99%)
Gene names: JW3304, b3342, rpsL, strA
Pfam: Ribosomal protein S12/S23
InterPro:
Small ribosomal subunit protein uS12 in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein uS12 in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein uS12 in PDB entry 3iy8, assembly 1, top view.
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Small ribosomal subunit protein uS15
Chain: O
Length: 88 amino acids
Theoretical weight: 10.19 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0ADZ4 (Residues: 2-89; Coverage: 99%)
Gene names: JW3134, b3165, rpsO, secC
Pfam: Ribosomal protein S15
InterPro:
Small ribosomal subunit protein uS15 in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein uS15 in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein uS15 in PDB entry 3iy8, assembly 1, top view.
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Small ribosomal subunit protein bS16
Chain: P
Length: 82 amino acids
Theoretical weight: 9.21 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7T3 (Residues: 1-82; Coverage: 100%)
Gene names: JW2590, b2609, rpsP
Pfam: Ribosomal protein S16
InterPro:
Small ribosomal subunit protein bS16 in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein bS16 in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein bS16 in PDB entry 3iy8, assembly 1, top view.
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Small ribosomal subunit protein uS17
Chain: Q
Length: 80 amino acids
Theoretical weight: 9.26 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0AG63 (Residues: 4-83; Coverage: 95%)
Gene names: JW3273, b3311, neaA, rpsQ
Pfam: Ribosomal protein S17
InterPro:
Small ribosomal subunit protein uS17 in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein uS17 in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein uS17 in PDB entry 3iy8, assembly 1, top view.
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Small ribosomal subunit protein bS18
Chain: R
Length: 55 amino acids
Theoretical weight: 6.47 KDa
Source organism: Escherichia coli K-12
UniProt:
  • Canonical: P0A7T7 (Residues: 20-74; Coverage: 73%)
Gene names: JW4160, b4202, rpsR
Pfam: Ribosomal protein S18
InterPro:
Small ribosomal subunit protein bS18 in PDB entry 3iy8, assembly 1, front view.
Small ribosomal subunit protein bS18 in PDB entry 3iy8, assembly 1, side view.
Small ribosomal subunit protein bS18 in PDB entry 3iy8, assembly 1, top view.
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RNA chain A
Name: Leishmania tarentolae mitochondrial small subunit
Representative chains: A
Length: 540 nucleotides
Theoretical weight: 172.22 KDa
Rfam: Trypanosomatid mitochondrial small subunit ribosomal RNA
Leishmania tarentolae mitochondrial small subunit in PDB entry 3iy8, assembly 1, front view.
Leishmania tarentolae mitochondrial small subunit in PDB entry 3iy8, assembly 1, side view.
Leishmania tarentolae mitochondrial small subunit in PDB entry 3iy8, assembly 1, top view.
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