PDBe 3iy8

Electron Microscopy
14.1Å resolution

Leishmania tarentolae Mitonchondrial Ribosome small subunit

Released:
Source organism: Escherichia coli K-12
Primary publication:
Structure of a mitochondrial ribosome with minimal RNA.
Proc. Natl. Acad. Sci. U.S.A. 106 9637-42 (2009)
PMID: 19497863
Related structures: EMD-5113

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 11-mer (preferred)
Entry contents:
10 distinct polypeptide molecules
1 distinct RNA molecule
Macromolecules (11 distinct):
30S ribosomal protein S5 Chain: E
Molecule details ›
Chain: E
Length: 150 amino acids
Theoretical weight: 15.8 KDa
Source organism: Escherichia coli K-12
30S ribosomal protein S6 Chain: F
Molecule details ›
Chain: F
Length: 100 amino acids
Theoretical weight: 11.67 KDa
Source organism: Escherichia coli K-12
30S ribosomal protein S8 Chain: H
Molecule details ›
Chain: H
Length: 129 amino acids
Theoretical weight: 14.02 KDa
Source organism: Escherichia coli K-12
30S ribosomal protein S9 Chain: I
Molecule details ›
Chain: I
Length: 127 amino acids
Theoretical weight: 14.55 KDa
Source organism: Escherichia coli K-12
30S ribosomal protein S11 Chain: K
Molecule details ›
Chain: K
Length: 117 amino acids
Theoretical weight: 12.49 KDa
Source organism: Escherichia coli K-12
30S ribosomal protein S12 Chain: L
Molecule details ›
Chain: L
Length: 123 amino acids
Theoretical weight: 13.64 KDa
Source organism: Escherichia coli K-12
30S ribosomal protein S15 Chain: O
Molecule details ›
Chain: O
Length: 88 amino acids
Theoretical weight: 10.19 KDa
Source organism: Escherichia coli K-12
30S ribosomal protein S16 Chain: P
Molecule details ›
Chain: P
Length: 82 amino acids
Theoretical weight: 9.21 KDa
Source organism: Escherichia coli K-12
30S ribosomal protein S17 Chain: Q
Molecule details ›
Chain: Q
Length: 80 amino acids
Theoretical weight: 9.26 KDa
Source organism: Escherichia coli K-12
30S ribosomal protein S18 Chain: R
Molecule details ›
Chain: R
Length: 55 amino acids
Theoretical weight: 6.47 KDa
Source organism: Escherichia coli K-12
Leishmania tarentolae mitochondrial small subunit Chain: A
Molecule details ›
Chain: A
Length: 540 nucleotides
Theoretical weight: 172.22 KDa
Sequence domains: Trypanosomatid mitochondrial small subunit ribosomal RNA

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 14.1Å
Relevant EMDB volumes: EMD-5113