› 3h2g

X-ray diffraction
1.86Å resolution

Crystal structure of a rice cell wall degrading esterase LipA from Xanthomonas oryzae

Released:
DOI: 10.2210/pdb3h2g/pdb
PDB entry 3h2g coloured by chain, front view.
PDB entry 3h2g coloured by chain, side view.
PDB entry 3h2g coloured by chain, top view.
Source organism: Xanthomonas oryzae pv. oryzae
Primary publication:
A cell wall-degrading esterase of Xanthomonas oryzae requires a unique substrate recognition module for pathogenesis on rice.
Aparna G, Chatterjee A, Sonti RV, Sankaranarayanan R
Plant Cell 21 1860-73 (2009)
PMID: 19525415

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177167 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Chain: A
Molecule details ›
Chain: A
Length: 397 amino acids
Theoretical weight: 42.66 KDa
Source organism: Xanthomonas oryzae pv. oryzae
Expression system: Xanthomonas oryzae pv. oryzae
UniProt:
  • Canonical: Q5H5J0 (Residues: 45-441; Coverage: 90%)
Gene names: DAP2, XOO0526
Sequence domains: Secretory lipase
Structure domains: alpha/beta hydrolase

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RUH3R
Spacegroup: C2
Unit cell:
a: 103.66Å b: 54.68Å c: 66.33Å
α: 90° β: 92.65° γ: 90°
R-values:
R R work R free
0.161 0.161 0.187
Expression system: Xanthomonas oryzae pv. oryzae

Quick links

Citations

2 review citations

Bacterial pathogenesis of plants: future challenges from a microbial perspective: Challenges in Bacterial Molecular Plant Pathology.
Pfeilmeier et al. (2016)
1 more

3 mentions without citation

Progress in super long loop prediction.
Zhao et al. (2011)
2 more