› 3ey8

X-ray diffraction
1.6Å resolution

Structure from the mobile metagenome of V. Pseudocholerae. VPC_CASS1

Released:
DOI: 10.2210/pdb3ey8/pdb
PDB entry 3ey8 coloured by chain, front view.
PDB entry 3ey8 coloured by chain, side view.
PDB entry 3ey8 coloured by chain, top view.
Source organism: Vibrio cholerae
Entry authors: Harrop SJ, Deshpande CN, Sureshan V, Boucher Y, Xu X, Cui H, Chang C, Edwards A, Joachimiak A, Savchenko A, Curmi PMG, Mabbutt BC, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-191752 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
VOC domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 133 amino acids
Theoretical weight: 14.96 KDa
Source organism: Vibrio cholerae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9K3D3 (Residues: 1-132; Coverage: 100%)
Gene names: VC_A0328, VC_A0341, VC_A0463
Sequence domains: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Structure domains: 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1

Ligands and Environments

1 bound ligand:
Ligand SO4 2 x SO4
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: P212121
Unit cell:
a: 38.851Å b: 62.087Å c: 98.055Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.158 0.156 0.187
Expression system: Escherichia coli

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