› 3eil

X-ray diffraction
2.6Å resolution

Structure of B-DNA d(CGTTAATTAACG)2 in the presence of Manganese

Released:
DOI: 10.2210/pdb3eil/pdb
PDB entry 3eil coloured by chain, front view.
PDB entry 3eil coloured by chain, side view.
PDB entry 3eil coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
The interaction of manganese ions with DNA.
Millonig H, Pous J, Gouyette C, Subirana JA, Campos JL
J Inorg Biochem 103 876-80 (2009)
PMID: 19375803

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116209 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(*DCP*DGP*DTP*DTP*DAP*DAP*DTP*DTP*DAP*DAP*DCP*DG)-3' Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 12 nucleotides
Theoretical weight: 3.66 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MN 7 x MN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM16
Spacegroup: P32
Unit cell:
a: 43.795Å b: 43.795Å c: 98.345Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.237 0.235 0.285
Expression system: Not provided

Quick links

Citations

12 citation in other articles

In situ determination of manganese(II) speciation in Deinococcus radiodurans by high magnetic field EPR: detection of high levels of Mn(II) bound to proteins.
Tabares et al. (2013)
11 more

3 mentions without citation

The many twists and turns of DNA: template, telomere, tool, and target.
Egli et al. (2010)
2 more