› 3dyt

X-ray diffraction
2.08Å resolution

Crystal structure of Snx9PX-BAR (230-595), C2221

Released:
DOI: 10.2210/pdb3dyt/pdb
PDB entry 3dyt coloured by chain, front view.
PDB entry 3dyt coloured by chain, side view.
PDB entry 3dyt coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structure and plasticity of Endophilin and Sorting Nexin 9.
Wang Q, Kaan HY, Hooda RN, Goh SL, Sondermann H
Structure 16 1574-87 (2008)
PMID: 18940612

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195298 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Sorting nexin-9 Chain: A
Molecule details ›
Chain: A
Length: 366 amino acids
Theoretical weight: 43.08 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9Y5X1 (Residues: 230-595; Coverage: 62%)
Gene names: SH3PX1, SH3PXD3A, SNX9
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand SO4 1 x SO4
1 modified residue:
Ligand MSE 14 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE A1
Spacegroup: C2221
Unit cell:
a: 67Å b: 144.005Å c: 103.331Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.219 0.217 0.245
Expression system: Escherichia coli BL21

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Citations

15 review citations

Regulation of the actin cytoskeleton-plasma membrane interplay by phosphoinositides.
Saarikangas et al. (2010)
14 more

6 mentions without citation

A high precision survey of the molecular dynamics of mammalian clathrin-mediated endocytosis.
Taylor et al. (2011)
5 more