› 3dkv

X-ray diffraction
1.82Å resolution

Crystal structure of adenylate kinase variant AKlse1

Released:
DOI: 10.2210/pdb3dkv/pdb
PDB entry 3dkv coloured by chain, front view.
PDB entry 3dkv coloured by chain, side view.
PDB entry 3dkv coloured by chain, top view.
Source organism: Bacillus subtilis
Entry authors: Bannen RM, Bianchetti CM, Bingman CA, Bitto EB

Function and Biology Details

Reaction catalysed: 
ATP + AMP = 2 ADP
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147678 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Adenylate kinase Chain: A
Molecule details ›
Chain: A
Length: 217 amino acids
Theoretical weight: 24.15 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P16304 (Residues: 1-217; Coverage: 100%)
Gene names: BSU01370, adk
Sequence domains:
Structure domains: P-loop containing nucleotide triphosphate hydrolases

Ligands and Environments

4 bound ligands:
Ligand ZN 1 x ZN
Ligand MG 1 x MG
Ligand AP5 1 x AP5
Ligand EDO 3 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-D
Spacegroup: P212121
Unit cell:
a: 44.624Å b: 62.056Å c: 86.995Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.177 0.174 0.231
Expression system: Escherichia coli BL21(DE3)

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