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Ribosomal protein L11 methyltransferase (PrmA) in complex with dimethylated ribosomal protein L11 in space group P212121

Source organisms:
Biochemical function: protein binding
Biological process: translation
Cellular component: ribonucleoprotein complex

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GO terms

Sequence families

Pfam Protein families (Pfam)
PF00298
Domain description: Ribosomal protein L11, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 3cjq contains 3 copies of Pfam domain PF00298 (Ribosomal protein L11, RNA binding domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain B.

PF03946
Domain description: Ribosomal protein L11, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 3cjq contains 3 copies of Pfam domain PF03946 (Ribosomal protein L11, N-terminal domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain B.

PF06325
Domain description: Ribosomal protein L11 methyltransferase (PrmA)
Occurring in:
  1. Ribosomal protein L11 methyltransferase
The deposited structure of PDB entry 3cjq contains 3 copies of Pfam domain PF06325 (Ribosomal protein L11 methyltransferase (PrmA)) in Ribosomal protein L11 methyltransferase. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR000911
Domain description: Ribosomal protein uL11
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR036769
Domain description: Large ribosomal subunit protein uL11, C-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR029063
Domain description: S-adenosyl-L-methionine-dependent methyltransferase superfamily
Occurring in:
  1. Ribosomal protein L11 methyltransferase
IPR020785
Domain description: Large ribosomal subunit protein uL11, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR020783
Domain description: Large ribosomal subunit protein uL11, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR020784
Domain description: Large ribosomal subunit protein uL11, N-terminal
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR036796
Domain description: Large ribosomal subunit protein uL11, N-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR006519
Domain description: Large ribosomal subunit protein uL11, bacterial-type
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR004498
Domain description: Ribosomal protein L11 methyltransferase
Occurring in:
  1. Ribosomal protein L11 methyltransferase

Structure domains

CATH CATH domains
1.10.10.250
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Arc Repressor Mutant, subunit A
Homology: Ribosomal protein L11, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 3cjq contains 3 copies of CATH domain 1.10.10.250 (Arc Repressor Mutant, subunit A) in Large ribosomal subunit protein uL11. Showing 1 copy in chain B.
3.30.1550.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Ribosomal protein L11, N-terminal domain
Homology: Ribosomal protein L11/L12, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 3cjq contains 3 copies of CATH domain 3.30.1550.10 (Ribosomal protein L11, N-terminal domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain B.
3.40.50.150
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: Rossmann fold
Homology: Vaccinia Virus protein VP39
Occurring in:
  1. Ribosomal protein L11 methyltransferase
The deposited structure of PDB entry 3cjq contains 3 copies of CATH domain 3.40.50.150 (Rossmann fold) in Ribosomal protein L11 methyltransferase. Showing 1 copy in chain A.
3.30.70.1170
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Alpha-Beta Plaits
Homology: Sun protein; domain 3
Occurring in:
  1. Ribosomal protein L11 methyltransferase
The deposited structure of PDB entry 3cjq contains 3 copies of CATH domain 3.30.70.1170 (Alpha-Beta Plaits) in Ribosomal protein L11 methyltransferase. Showing 1 copy in chain A.
SCOP SCOP annotations
46907
Class: All alpha proteins
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Ribosomal protein L11, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 3cjq contains 3 copies of SCOP domain 46907 (Ribosomal protein L11, C-terminal domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain B.
54748
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal L11/L12e N-terminal domain
Superfamily: Ribosomal L11/L12e N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 3cjq contains 3 copies of SCOP domain 54748 (Ribosomal L11/L12e N-terminal domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain B.
102578
Class: Alpha and beta proteins (a/b)
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Occurring in:
  1. Ribosomal protein L11 methyltransferase
The deposited structure of PDB entry 3cjq contains 3 copies of SCOP domain 102578 (Ribosomal protein L11 methyltransferase PrmA) in Ribosomal protein L11 methyltransferase. Showing 1 copy in chain A.

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