› 3bwv

X-ray diffraction
1.55Å resolution

Crystal structure of deoxyribonucleotidase-like protein (NP_764060.1) from Staphylococcus epidermidis ATCC 12228 at 1.55 A resolution

Released:
DOI: 10.2210/pdb3bwv/pdb
PDB entry 3bwv coloured by chain, front view.
PDB entry 3bwv coloured by chain, side view.
PDB entry 3bwv coloured by chain, top view.
Source organism: Staphylococcus epidermidis ATCC 12228
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-184008 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative 5'(3')-deoxyribonucleotidase Chains: A, B
Molecule details ›
Chains: A, B
Length: 180 amino acids
Theoretical weight: 21.45 KDa
Source organism: Staphylococcus epidermidis ATCC 12228
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8CTG7 (Residues: 1-179; Coverage: 100%)
Gene name: SE_0505
Sequence domains: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand MG 2 x MG
Ligand CL 2 x CL
1 modified residue:
Ligand MSE 16 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P1
Unit cell:
a: 39.31Å b: 40.27Å c: 55.31Å
α: 71.93° β: 75.08° γ: 83.62°
R-values:
R R work R free
0.184 0.182 0.223
Expression system: Escherichia coli

Quick links