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Crystal structure of a new RNA polymerase interacting protein

Source organism: Escherichia coli
Biochemical function: RNA polymerase binding
Biological process: regulation of DNA-templated transcription elongation
Cellular component: not assigned

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GO terms

Sequence families

Pfam Protein families (Pfam)
PF01272
Domain description: Transcription elongation factor, GreA/GreB, C-term
Occurring in:
  1. Regulator of nucleoside diphosphate kinase
The deposited structure of PDB entry 3bmb contains 2 copies of Pfam domain PF01272 (Transcription elongation factor, GreA/GreB, C-term) in Regulator of nucleoside diphosphate kinase. Showing 1 copy in chain A.

PF14760
Domain description: Rnk N-terminus
Occurring in:
  1. Regulator of nucleoside diphosphate kinase
The deposited structure of PDB entry 3bmb contains 2 copies of Pfam domain PF14760 (Rnk N-terminus) in Regulator of nucleoside diphosphate kinase. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR001437
Domain description: Transcription elongation factor, GreA/GreB, C-terminal
Occurring in:
  1. Regulator of nucleoside diphosphate kinase
IPR036953
Domain description: Transcription elongation factor GreA/GreB, C-terminal domain superfamily
Occurring in:
  1. Regulator of nucleoside diphosphate kinase
IPR023459
Domain description: Transcription elongation factor GreA/GreB family
Occurring in:
  1. Regulator of nucleoside diphosphate kinase
IPR029462
Domain description: Regulator of nucleoside diphosphate kinase, N-terminal domain
Occurring in:
  1. Regulator of nucleoside diphosphate kinase
IPR028625
Domain description: Regulator of nucleoside diphosphate kinase
Occurring in:
  1. Regulator of nucleoside diphosphate kinase

Structure domains

CATH CATH domains
3.10.50.30
Class: Alpha Beta
Architecture: Roll
Topology: Chitinase A; domain 3
Homology: Transcription elongation factor, GreA/GreB, C-terminal domain
Occurring in:
  1. Regulator of nucleoside diphosphate kinase
The deposited structure of PDB entry 3bmb contains 2 copies of CATH domain 3.10.50.30 (Chitinase A; domain 3) in Regulator of nucleoside diphosphate kinase. Showing 1 copy in chain A.
1.10.286.20
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: GTP Cyclohydrolase I; Chain A, domain 1
Homology: GTP Cyclohydrolase I; Chain A, domain 1
Occurring in:
  1. Regulator of nucleoside diphosphate kinase
The deposited structure of PDB entry 3bmb contains 2 copies of CATH domain 1.10.286.20 (GTP Cyclohydrolase I; Chain A, domain 1) in Regulator of nucleoside diphosphate kinase. Showing 1 copy in chain A.

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