3vvw

X-ray diffraction
2.5Å resolution

NDP52 in complex with LC3C

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
Non-polymer only dimer (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Calcium-binding and coiled-coil domain-containing protein 2 Chain: A
Molecule details ›
Chain: A
Length: 123 amino acids
Theoretical weight: 14.6 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q13137 (Residues: 21-141; Coverage: 27%)
  • Best match: Q13137-5 (Residues: 1-69)
Gene names: CALCOCO2, NDP52
Sequence domains: SKICH domain
Structure domains: Immunoglobulin-like
Microtubule-associated proteins 1A/1B light chain 3C Chain: B
Molecule details ›
Chain: B
Length: 128 amino acids
Theoretical weight: 14.81 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9BXW4 (Residues: 1-126; Coverage: 86%)
Gene name: MAP1LC3C
Sequence domains: Autophagy protein Atg8 ubiquitin like
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: C2
Unit cell:
a: 195.72Å b: 37.42Å c: 40.28Å
α: 90° β: 94.66° γ: 90°
R-values:
R R work R free
0.212 0.21 0.252
Expression system: Escherichia coli