2win

X-ray diffraction
3.9Å resolution

Function and Biology Details

Reaction catalysed:
Cleavage of Arg-|-Ser bond in complement component C3 alpha-chain to yield C3a and C3b, and Arg-|- bond in complement component C5 alpha-chain to yield C5a and C5b.
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero octamer (preferred)
PDBe Complex ID:
PDB-CPX-133310 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (12 distinct):
Complement C3 beta chain Chains: A, C, E, G
Molecule details ›
Chains: A, C, E, G
Length: 645 amino acids
Theoretical weight: 71.39 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: P01024 (Residues: 23-667; Coverage: 39%)
Gene names: C3, CPAMD1
Sequence domains:
Structure domains:
Complement factor B Bb fragment Chains: I, J, K, L
Molecule details ›
Chains: I, J, K, L
Length: 507 amino acids
Theoretical weight: 57.26 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P00751 (Residues: 260-764; Coverage: 68%)
Gene names: BF, BFD, CFB
Sequence domains:
Structure domains:
Staphylococcal complement inhibitor Chains: M, N, P, Q
Molecule details ›
Chains: M, N, P, Q
Length: 92 amino acids
Theoretical weight: 10.78 KDa
Source organism: Staphylococcus aureus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q6GFB4 (Residues: 32-116; Coverage: 100%)
Gene names: SAR2035, scn
Sequence domains: Staphylococcal complement inhibitor SCIN
Structure domains: Substrate Binding Domain Of Dnak; Chain:A; Domain 2

Ligands and Environments

Carbohydrate polymer : NEW Components: BMA, NAG
Carbohydrate polymer : NEW Components: BMA, NAG
Carbohydrate polymer : NEW Components: BMA, NAG
Carbohydrate polymer : NEW Components: BMA, NAG
Carbohydrate polymer : NEW Components: MAN, NAG
Carbohydrate polymer : NEW Components: MAN, NAG
Carbohydrate polymer : NEW Components: MAN, NAG
Carbohydrate polymer : NEW Components: NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: P21
Unit cell:
a: 228.632Å b: 121.491Å c: 280.783Å
α: 90° β: 91.64° γ: 90°
R-values:
R R work R free
0.253 0.253 0.268
Expression systems:
  • Homo sapiens
  • Escherichia coli BL21(DE3)