2rrr

Solution NMR

DNA oligomer containing ethylene cross-linked cyclic 2'-deoxyuridylate dimer

Released:
Source organism: Synthetic construct
Primary publication:
Structural feature of bent DNA recognized by HMGB1.
J. Am. Chem. Soc. 133 5788-90 (2011)
PMID: 21443191

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
DNA (5'-D(*CP*CP*TP*TP*CP*AP*TP*TP*AP*CP*AP*TP*CP*C)-3') Chain: A
Molecule details ›
Chain: A
Length: 14 nucleotides
Theoretical weight: 4.15 KDa
Source organism: Synthetic construct
Expression system: Not provided
DNA (5'-D(*GP*GP*AP*TP*GP*TP*AP*AP*TP*GP*AP*AP*GP*G)-3') Chain: B
Molecule details ›
Chain: B
Length: 14 nucleotides
Theoretical weight: 4.41 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 35%
Refinement method: torsion angle dynamics
Chemical shifts: BMR11438  
Expression system: Not provided