› 2p6y

X-ray diffraction
1.63Å resolution

X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.

Released:
DOI: 10.2210/pdb2p6y/pdb
PDB entry 2p6y coloured by chain, front view.
PDB entry 2p6y coloured by chain, side view.
PDB entry 2p6y coloured by chain, top view.
Source organism: Vibrio cholerae
Entry authors: Kuzin AP, Abashidze M, Jayaraman S, Chen CX, Wang C, Fang Y, Cunningham K, Owens L, Xiao R, Liu J, Baran MC, Acton TB, Rost B, Montelione GT, Tong L, Hunt J, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domain:

Structure analysis Details

Assemblies composition:
homo trimer (preferred)
homo 24-mer
Assembly name:
PDBe Complex ID:
PDB-CPX-191954 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
PPC domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 142 amino acids
Theoretical weight: 16.02 KDa
Source organism: Vibrio cholerae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9KM02 (Residues: 1-130; Coverage: 100%)
Gene name: VC_A0587
Sequence domains: Plants and Prokaryotes Conserved (PCC) domain
Structure domains: Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2

Ligands and Environments

1 bound ligand:
Ligand ZN 1 x ZN
1 modified residue:
Ligand MSE 3 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: F432
Unit cell:
a: 172.924Å b: 172.924Å c: 172.924Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.207 0.207 0.223
Expression system: Escherichia coli

Quick links