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13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Source organism: Haloarcula marismortui
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: ribosome

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF17144
Domain description: Ribosomal large subunit proteins 60S L5, and 50S L18
Occurring in:
  1. Large ribosomal subunit protein uL18
The deposited structure of PDB entry 2otj contains 2 copies of Pfam domain PF17144 (Ribosomal large subunit proteins 60S L5, and 50S L18) in Large ribosomal subunit protein uL18. Showing 2 copies in chain O [auth N].

PF00828
Domain description: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Occurring in:
  1. Large ribosomal subunit protein uL15
  2. Large ribosomal subunit protein eL18
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00828 (Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A) in Large ribosomal subunit protein uL15. Showing 1 copy in chain M [auth L].
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00828 (Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A) in Large ribosomal subunit protein eL18. Showing 1 copy in chain P [auth O].

PF00347
Domain description: Ribosomal protein L6
Occurring in:
  1. Large ribosomal subunit protein uL6
The deposited structure of PDB entry 2otj contains 2 copies of Pfam domain PF00347 (Ribosomal protein L6) in Large ribosomal subunit protein uL6. Showing 2 copies in chain G [auth E].

PF01780
Domain description: Ribosomal L37ae protein family
Occurring in:
  1. Large ribosomal subunit protein eL43
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF01780 (Ribosomal L37ae protein family) in Large ribosomal subunit protein eL43. Showing 1 copy in chain AA [auth Z].

PF01655
Domain description: Ribosomal protein L32
Occurring in:
  1. Large ribosomal subunit protein eL32
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF01655 (Ribosomal protein L32) in Large ribosomal subunit protein eL32. Showing 1 copy in chain Z [auth Y].

PF14520
Domain description: Helix-hairpin-helix domain
Occurring in:
  1. Large ribosomal subunit protein eL32
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF14520 (Helix-hairpin-helix domain) in Large ribosomal subunit protein eL32. Showing 1 copy in chain Z [auth Y] (this domain is out of the observed residue ranges!).

PF01198
Domain description: Ribosomal protein L31e
Occurring in:
  1. Large ribosomal subunit protein eL31
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF01198 (Ribosomal protein L31e) in Large ribosomal subunit protein eL31. Showing 1 copy in chain Y [auth X].

PF00327
Domain description: Ribosomal protein L30p/L7e
Occurring in:
  1. Large ribosomal subunit protein uL30
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00327 (Ribosomal protein L30p/L7e) in Large ribosomal subunit protein uL30. Showing 1 copy in chain X [auth W].

PF00831
Domain description: Ribosomal L29 protein
Occurring in:
  1. Large ribosomal subunit protein uL29
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00831 (Ribosomal L29 protein) in Large ribosomal subunit protein uL29. Showing 1 copy in chain W [auth V].

PF01246
Domain description: Ribosomal protein L24e
Occurring in:
  1. Large ribosomal subunit protein eL24
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF01246 (Ribosomal protein L24e) in Large ribosomal subunit protein eL24. Showing 1 copy in chain V [auth U].

PF00467
Domain description: KOW motif
Occurring in:
  1. Large ribosomal subunit protein uL24
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00467 (KOW motif) in Large ribosomal subunit protein uL24. Showing 1 copy in chain U [auth T].

PF16906
Domain description: Ribosomal proteins L26 eukaryotic, L24P archaeal
Occurring in:
  1. Large ribosomal subunit protein uL24
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF16906 (Ribosomal proteins L26 eukaryotic, L24P archaeal) in Large ribosomal subunit protein uL24. Showing 1 copy in chain U [auth T].

PF00276
Domain description: Ribosomal protein L23
Occurring in:
  1. Large ribosomal subunit protein uL23
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00276 (Ribosomal protein L23) in Large ribosomal subunit protein uL23. Showing 1 copy in chain T [auth S].

PF00237
Domain description: Ribosomal protein L22p/L17e
Occurring in:
  1. Large ribosomal subunit protein uL22
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00237 (Ribosomal protein L22p/L17e) in Large ribosomal subunit protein uL22. Showing 1 copy in chain S [auth R].

PF01157
Domain description: Ribosomal protein L21e
Occurring in:
  1. Large ribosomal subunit protein eL21
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF01157 (Ribosomal protein L21e) in Large ribosomal subunit protein eL21. Showing 1 copy in chain R [auth Q].

PF01280
Domain description: Ribosomal protein L19e
Occurring in:
  1. Large ribosomal subunit protein eL19
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF01280 (Ribosomal protein L19e) in Large ribosomal subunit protein eL19. Showing 1 copy in chain Q [auth P].

PF00827
Domain description: Ribosomal L15
Occurring in:
  1. Large ribosomal subunit protein eL15
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00827 (Ribosomal L15) in Large ribosomal subunit protein eL15. Showing 1 copy in chain N [auth M].

PF00238
Domain description: Ribosomal protein L14p/L23e
Occurring in:
  1. Large ribosomal subunit protein uL14
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00238 (Ribosomal protein L14p/L23e) in Large ribosomal subunit protein uL14. Showing 1 copy in chain L [auth K].

PF00572
Domain description: Ribosomal protein L13
Occurring in:
  1. Large ribosomal subunit protein uL13
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00572 (Ribosomal protein L13) in Large ribosomal subunit protein uL13. Showing 1 copy in chain K [auth J].

PF00298
Domain description: Ribosomal protein L11, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00298 (Ribosomal protein L11, RNA binding domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain EA [auth I].

PF03946
Domain description: Ribosomal protein L11, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF03946 (Ribosomal protein L11, N-terminal domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain EA [auth I] (this domain is out of the observed residue ranges!).

PF00252
Domain description: Ribosomal protein L16p/L10e
Occurring in:
  1. Large ribosomal subunit protein uL16
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00252 (Ribosomal protein L16p/L10e) in Large ribosomal subunit protein uL16. Showing 1 copy in chain J [auth H].

PF17777
Domain description: Insertion domain in 60S ribosomal protein L10P
Occurring in:
  1. Large ribosomal subunit protein uL10
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF17777 (Insertion domain in 60S ribosomal protein L10P) in Large ribosomal subunit protein uL10. Showing 1 copy in chain I [auth G] (this domain is out of the observed residue ranges!).

PF00466
Domain description: Ribosomal protein L10
Occurring in:
  1. Large ribosomal subunit protein uL10
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00466 (Ribosomal protein L10) in Large ribosomal subunit protein uL10. Showing 1 copy in chain I [auth G].

PF01248
Domain description: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Occurring in:
  1. Large ribosomal subunit protein eL8
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Large ribosomal subunit protein eL8. Showing 1 copy in chain H [auth F].

PF00673
Domain description: ribosomal L5P family C-terminus
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00673 (ribosomal L5P family C-terminus) in Large ribosomal subunit protein uL5. Showing 1 copy in chain F [auth D].

PF00281
Domain description: Ribosomal protein L5
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00281 (Ribosomal protein L5) in Large ribosomal subunit protein uL5. Showing 1 copy in chain F [auth D].

PF00573
Domain description: Ribosomal protein L4/L1 family
Occurring in:
  1. Large ribosomal subunit protein uL4
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00573 (Ribosomal protein L4/L1 family) in Large ribosomal subunit protein uL4. Showing 1 copy in chain E [auth C].

PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00297 (Ribosomal protein L3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain D [auth B].

PF03947
Domain description: Ribosomal Proteins L2, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF03947 (Ribosomal Proteins L2, C-terminal domain) in Large ribosomal subunit protein uL2. Showing 1 copy in chain C [auth A].

PF00181
Domain description: Ribosomal Proteins L2, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00181 (Ribosomal Proteins L2, RNA binding domain) in Large ribosomal subunit protein uL2. Showing 1 copy in chain C [auth A].

PF00935
Domain description: Ribosomal protein L44
Occurring in:
  1. Large ribosomal subunit protein eL42
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00935 (Ribosomal protein L44) in Large ribosomal subunit protein eL42. Showing 1 copy in chain DA [auth 3].

PF00832
Domain description: Ribosomal L39 protein
Occurring in:
  1. Large ribosomal subunit protein eL39
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF00832 (Ribosomal L39 protein) in Large ribosomal subunit protein eL39. Showing 1 copy in chain CA [auth 2].

PF01907
Domain description: Ribosomal protein L37e
Occurring in:
  1. Large ribosomal subunit protein eL37
The deposited structure of PDB entry 2otj contains 1 copy of Pfam domain PF01907 (Ribosomal protein L37e) in Large ribosomal subunit protein eL37. Showing 1 copy in chain BA [auth 1].

Rfam RNA families (Rfam)
RF02540
Domain description: Archaeal large subunit ribosomal RNA
Occurring in:
  1. 23S ribosomal RNA
The deposited structure of PDB entry 2otj contains 1 copy of Rfam domain RF02540 (Archaeal large subunit ribosomal RNA) in 23S ribosomal RNA. Showing 1 copy in chain A [auth 0].

RF00001
Domain description: 5S ribosomal RNA
Occurring in:
  1. 5S ribosomal RNA
The deposited structure of PDB entry 2otj contains 1 copy of Rfam domain RF00001 (5S ribosomal RNA) in 5S ribosomal RNA. Showing 1 copy in chain B [auth 9].

InterPro InterPro annotations
IPR005485
Domain description: Large ribosomal subunit protein uL18 eukaryotic/archaeal
Occurring in:
  1. Large ribosomal subunit protein uL18
IPR000054
Domain description: Large ribosomal subunit protein eL31
Occurring in:
  1. Large ribosomal subunit protein eL31
IPR005822
Domain description: Large ribosomal subunit protein uL13
Occurring in:
  1. Large ribosomal subunit protein uL13
IPR000911
Domain description: Ribosomal protein uL11
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR018492
Domain description: Ribosomal protein eL8/Nhp2 family
Occurring in:
  1. Large ribosomal subunit protein eL8
IPR036789
Domain description: Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR001515
Domain description: Large ribosomal subunit protein eL32
Occurring in:
  1. Large ribosomal subunit protein eL32
IPR001854
Domain description: Large ribosomal subunit protein uL29
Occurring in:
  1. Large ribosomal subunit protein uL29
IPR013025
Domain description: Large ribosomal subunit protein uL23-like
Occurring in:
  1. Large ribosomal subunit protein uL23
IPR005721
Domain description: Large ribosomal subunit protein uL22, eukaryotic/archaeal
Occurring in:
  1. Large ribosomal subunit protein uL22
IPR000196
Domain description: Large ribosomal subunit protein eL19 domain
Occurring in:
  1. Large ribosomal subunit protein eL19
IPR000439
Domain description: Large ribosomal subunit protein eL15
Occurring in:
  1. Large ribosomal subunit protein eL15
IPR000218
Domain description: Large ribosomal subunit protein uL14
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR008991
Domain description: Translation protein SH3-like domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL2
  2. Large ribosomal subunit protein eL21
  3. Large ribosomal subunit protein uL24
IPR002171
Domain description: Large ribosomal subunit protein uL2
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR000552
Domain description: Large ribosomal subunit protein eL42
Occurring in:
  1. Large ribosomal subunit protein eL42
IPR011332
Domain description: Zinc-binding ribosomal protein
Occurring in:
  1. Large ribosomal subunit protein eL37
  2. Large ribosomal subunit protein eL42
  3. Large ribosomal subunit protein eL43
IPR002674
Domain description: Large ribosomal subunit protein eL43
Occurring in:
  1. Large ribosomal subunit protein eL43
IPR003583
Domain description: Helix-hairpin-helix DNA-binding motif, class 1
Occurring in:
  1. Large ribosomal subunit protein eL32
IPR023621
Domain description: Large ribosomal subunit protein eL31 domain superfamily
Occurring in:
  1. Large ribosomal subunit protein eL31
IPR036919
Domain description: Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR005997
Domain description: Large ribosomal subunit protein uL30, archaeal
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR036049
Domain description: Large ribosomal subunit protein uL29 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL29
IPR000988
Domain description: Large ribosomal subunit protein eL24-related
Occurring in:
  1. Large ribosomal subunit protein eL24
IPR005824
Domain description: KOW
Occurring in:
  1. Large ribosomal subunit protein uL24
IPR005756
Domain description: Large ribosomal subunit protein uL24, eukaryotic/archaeal
Occurring in:
  1. Large ribosomal subunit protein uL24
IPR001063
Domain description: Large ribosomal subunit protein uL22
Occurring in:
  1. Large ribosomal subunit protein uL22
IPR036394
Domain description: Ribosomal protein uL22 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL22
IPR012678
Domain description: Ribosomal protein uL23/eL15/eS24 core domain superfamily
Occurring in:
  1. Large ribosomal subunit protein eL15
  2. Large ribosomal subunit protein uL23
IPR001196
Domain description: Large ribosomal subunit protein uL15, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL15
  2. Large ribosomal subunit protein eL18
IPR021131
Domain description: Large ribosomal subunit protein uL15/eL18
Occurring in:
  1. Large ribosomal subunit protein uL15
  2. Large ribosomal subunit protein eL18
IPR036227
Domain description: Large ribosomal subunit protein uL15/eL18 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL15
  2. Large ribosomal subunit protein eL18
IPR036853
Domain description: Large ribosomal subunit protein uL14 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR036899
Domain description: Large ribosomal subunit protein uL13 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL13
IPR036769
Domain description: Large ribosomal subunit protein uL11, C-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR036796
Domain description: Large ribosomal subunit protein uL11, N-terminal domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR036920
Domain description: Large ribosomal subunit protein uL16 superfamily
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR001197
Domain description: Large ribosomal subunit protein uL16, eukaryotes/archaea
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR043141
Domain description: Large ribosomal subunit protein uL10-like domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL10
IPR029064
Domain description: Ribosomal protein eL30-like superfamily
Occurring in:
  1. Large ribosomal subunit protein eL8
IPR022481
Domain description: Large ribosomal subunit protein eL8, archaea
Occurring in:
  1. Large ribosomal subunit protein eL8
IPR020040
Domain description: Large ribosomal subunit protein uL6, alpha-beta domain
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR019907
Domain description: Large ribosomal subunit protein uL6, archaea
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR000702
Domain description: Large ribosomal subunit protein uL6-like
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR022803
Domain description: Large ribosomal subunit protein uL5 domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR002132
Domain description: Large ribosomal subunit protein uL5
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR023574
Domain description: Large ribosomal subunit protein uL4 domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL4
IPR019970
Domain description: Large ribosomal subunit protein uL4, archaea
Occurring in:
  1. Large ribosomal subunit protein uL4
IPR019928
Domain description: Large ribosomal subunit protein uL3, archaeal
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR022669
Domain description: Large ribosomal subunit protein uL2, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR014722
Domain description: Large ribosomal subunit protein uL2, domain 2
Occurring in:
  1. Large ribosomal subunit protein uL2
  2. Large ribosomal subunit protein uL24
IPR012340
Domain description: Nucleic acid-binding, OB-fold
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR023626
Domain description: Large ribosomal subunit protein eL39 domain superfamily
Occurring in:
  1. Large ribosomal subunit protein eL39
IPR000077
Domain description: Large ribosomal subunit protein eL39
Occurring in:
  1. Large ribosomal subunit protein eL39
IPR001569
Domain description: Large ribosomal subunit protein eL37
Occurring in:
  1. Large ribosomal subunit protein eL37
IPR011331
Domain description: Large ribosomal subunit protein eL37/eL43
Occurring in:
  1. Large ribosomal subunit protein eL37
  2. Large ribosomal subunit protein eL43
IPR018263
Domain description: Large ribosomal subunit protein eL32, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL32
IPR023654
Domain description: Large ribosomal subunit protein eL32, archaeal
Occurring in:
  1. Large ribosomal subunit protein eL32
IPR036351
Domain description: Large ribosomal subunit protein eL32 superfamily
Occurring in:
  1. Large ribosomal subunit protein eL32
IPR010995
Domain description: DNA repair Rad51/transcription factor NusA, alpha-helical
Occurring in:
  1. Large ribosomal subunit protein eL32
IPR020052
Domain description: Large ribosomal subunit protein eL31, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL31
IPR018038
Domain description: Large ribosomal subunit protein uL30, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR016082
Domain description: Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR039699
Domain description: Large ribosomal subunit protein uL30
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR035808
Domain description: Large ribosomal subunit protein uL30, eukaryotic/archaeal
Occurring in:
  1. Large ribosomal subunit protein uL30
IPR018254
Domain description: Large ribosomal subunit protein uL29, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL29
IPR023442
Domain description: Large ribosomal subunit protein eL24, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL24
IPR011017
Domain description: TRASH domain
Occurring in:
  1. Large ribosomal subunit protein eL24
IPR038630
Domain description: Ribosomal protein L24e/L24 superfamily
Occurring in:
  1. Large ribosomal subunit protein eL24
IPR023438
Domain description: Large ribosomal subunit protein eL24
Occurring in:
  1. Large ribosomal subunit protein eL24
IPR041988
Domain description: Large ribosomal subunit protein uL24, KOW domain
Occurring in:
  1. Large ribosomal subunit protein uL24
IPR005825
Domain description: Large ribosomal subunit protein uL24, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL24
IPR001014
Domain description: Large ribosomal subunit protein uL23, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL23
IPR019985
Domain description: Large ribosomal subunit protein uL23
Occurring in:
  1. Large ribosomal subunit protein uL23
IPR012677
Domain description: Nucleotide-binding alpha-beta plait domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL23
IPR018260
Domain description: Large ribosomal subunit protein uL22, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL22
IPR018259
Domain description: Large ribosomal subunit protein eL21, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL21
IPR022856
Domain description: Large ribosomal subunit protein eL21, archaeal
Occurring in:
  1. Large ribosomal subunit protein eL21
IPR036948
Domain description: Large ribosomal subunit protein eL21 superfamily
Occurring in:
  1. Large ribosomal subunit protein eL21
IPR001147
Domain description: Large ribosomal subunit protein eL21
Occurring in:
  1. Large ribosomal subunit protein eL21
IPR015974
Domain description: Large ribosomal subunit protein eL19, domain 3
Occurring in:
  1. Large ribosomal subunit protein eL19
IPR015973
Domain description: Large ribosomal subunit protein eL19, domain 2
Occurring in:
  1. Large ribosomal subunit protein eL19
IPR023638
Domain description: Large ribosomal subunit protein eL19, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL19
IPR033936
Domain description: Large ribosomal subunit protein eL19, archaeal
Occurring in:
  1. Large ribosomal subunit protein eL19
IPR035970
Domain description: Large ribosomal subunit protein eL19 superfamily
Occurring in:
  1. Large ribosomal subunit protein eL19
IPR039547
Domain description: Large ribosomal subunit protein eL19
Occurring in:
  1. Large ribosomal subunit protein eL19
IPR015972
Domain description: Large ribosomal subunit protein eL19, domain 1
Occurring in:
  1. Large ribosomal subunit protein eL19
IPR021132
Domain description: Large ribosomal subunit protein eL18, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL18
IPR000039
Domain description: Large ribosomal subunit protein eL18
Occurring in:
  1. Large ribosomal subunit protein eL18
IPR022947
Domain description: Large ribosomal subunit protein eL18, archaea
Occurring in:
  1. Large ribosomal subunit protein eL18
IPR020925
Domain description: Large ribosomal subunit protein eL15, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL15
IPR020926
Domain description: Large ribosomal subunit protein eL15, archaeal
Occurring in:
  1. Large ribosomal subunit protein eL15
IPR024794
Domain description: Large ribosomal subunit protein eL15 core domain superfamily
Occurring in:
  1. Large ribosomal subunit protein eL15
IPR030878
Domain description: Large ribosomal subunit protein uL15
Occurring in:
  1. Large ribosomal subunit protein uL15
IPR027386
Domain description: Ribosomal uL15, N-terminal
Occurring in:
  1. Large ribosomal subunit protein uL15
IPR019972
Domain description: Large ribosomal subunit protein uL14, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR019971
Domain description: Large ribosomal subunit protein uL14, archaeal
Occurring in:
  1. Large ribosomal subunit protein uL14
IPR023563
Domain description: Large ribosomal subunit protein uL13, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL13
IPR005755
Domain description: Large ribosomal subunit protein uL13, eukaryotic/archaeal
Occurring in:
  1. Large ribosomal subunit protein uL13
IPR020785
Domain description: Large ribosomal subunit protein uL11, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR020783
Domain description: Large ribosomal subunit protein uL11, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR020784
Domain description: Large ribosomal subunit protein uL11, N-terminal
Occurring in:
  1. Large ribosomal subunit protein uL11
IPR018255
Domain description: Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaea
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR016180
Domain description: Large ribosomal subunit protein uL16 domain
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR047873
Domain description: Large ribosomal subunit protein uL16
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR022981
Domain description: Large ribosomal subunit protein uL16, archaea
Occurring in:
  1. Large ribosomal subunit protein uL16
IPR040637
Domain description: Large ribosomal subunit protein uL10-like, insertion domain
Occurring in:
  1. Large ribosomal subunit protein uL10
IPR043164
Domain description: Large ribosomal subunit protein uL10-like, insertion domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL10
IPR001790
Domain description: Large ribosomal subunit protein uL10
Occurring in:
  1. Large ribosomal subunit protein uL10
IPR022909
Domain description: Large ribosomal subunit protein uL10, archaea
Occurring in:
  1. Large ribosomal subunit protein uL10
IPR004037
Domain description: Large ribosomal subunit protein eL8-like, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL8
IPR004038
Domain description: Ribosomal protein eL8/eL30/eS12/Gadd45
Occurring in:
  1. Large ribosomal subunit protein eL8
IPR002359
Domain description: Large ribosomal subunit protein uL6, conserved site-2
Occurring in:
  1. Large ribosomal subunit protein uL6
IPR031309
Domain description: Large ribosomal subunit protein uL5, C-terminal
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR020929
Domain description: Large ribosomal subunit protein uL5, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR031310
Domain description: Large ribosomal subunit protein uL5, N-terminal
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR022804
Domain description: Large ribosomal subunit protein uL5, archaeal
Occurring in:
  1. Large ribosomal subunit protein uL5
IPR013000
Domain description: Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL4
IPR002136
Domain description: Large ribosomal subunit protein uL4
Occurring in:
  1. Large ribosomal subunit protein uL4
IPR045240
Domain description: Large ribosomal subunit protein uL4, eukaryotic and archaeal type
Occurring in:
  1. Large ribosomal subunit protein uL4
IPR019926
Domain description: Large ribosomal subunit protein uL3, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR045077
Domain description: Large ribosomal subunit protein uL3, archaeal/eukaryotic-type
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR044892
Domain description: Ribosomal protein L3, domain 3, archaeal-type superfamily
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR009000
Domain description: Translation protein, beta-barrel domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR000597
Domain description: Large ribosomal subunit protein uL3
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR022671
Domain description: Large ribosomal subunit protein uL2, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR014726
Domain description: Large ribosomal subunit protein uL2, domain 3
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR022666
Domain description: Large ribosomal subunit protein uL2, RNA-binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR023672
Domain description: Large ribosomal subunit protein uL2, archaeal-type
Occurring in:
  1. Large ribosomal subunit protein uL2
IPR020083
Domain description: Large ribosomal subunit protein eL39, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL39
IPR018267
Domain description: Large ribosomal subunit protein eL37, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL37

Structure domains

CATH CATH domains
2.40.30.10
Class: Mainly Beta
Architecture: Beta Barrel
Topology: Elongation Factor Tu (Ef-tu); domain 3
Homology: Translation factors
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 2.40.30.10 (Elongation Factor Tu (Ef-tu); domain 3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain D [auth B].
3.30.1390.20
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Ribosomal Protein L30; Chain: A,
Homology: Ribosomal protein L30, ferredoxin-like fold domain
Occurring in:
  1. Large ribosomal subunit protein uL30
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.30.1390.20 (Ribosomal Protein L30; Chain: A,) in Large ribosomal subunit protein uL30. Showing 1 copy in chain X [auth W].
3.100.10.10
Class: Alpha Beta
Architecture: Ribosomal Protein L15; Chain: K; domain 2
Topology: Ribosomal Protein L15; Chain: K; domain 2
Homology: Ribosomal Protein L15; Chain: K; domain 2
Occurring in:
  1. Large ribosomal subunit protein uL15
  2. Large ribosomal subunit protein eL18
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.100.10.10 (Ribosomal Protein L15; Chain: K; domain 2) in Large ribosomal subunit protein uL15. Showing 1 copy in chain M [auth L].
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.100.10.10 (Ribosomal Protein L15; Chain: K; domain 2) in Large ribosomal subunit protein eL18. Showing 1 copy in chain P [auth O].
3.90.930.12
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: Outer Surface Protein A; domain 3
Homology: Ribosomal protein L6, alpha-beta domain
Occurring in:
  1. Large ribosomal subunit protein uL6
The deposited structure of PDB entry 2otj contains 2 copies of CATH domain 3.90.930.12 (Outer Surface Protein A; domain 3) in Large ribosomal subunit protein uL6. Showing 2 copies in chain G [auth E].
4.10.960.10
Class: Few Secondary Structures
Architecture: Irregular
Topology: Ribosomal protein L3; domain 3
Homology: Ribosomal protein L3, domain 3
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 4.10.960.10 (Ribosomal protein L3; domain 3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain D [auth B].
2.30.30.30
Class: Mainly Beta
Architecture: Roll
Topology: SH3 type barrels.
Homology: SH3 type barrels.
Occurring in:
  1. Large ribosomal subunit protein uL2
  2. Large ribosomal subunit protein uL24
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 2.30.30.30 (SH3 type barrels.) in Large ribosomal subunit protein uL2. Showing 1 copy in chain C [auth A].
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 2.30.30.30 (SH3 type barrels.) in Large ribosomal subunit protein uL24. Showing 1 copy in chain U [auth T].
2.20.25.30
Class: Mainly Beta
Architecture: Single Sheet
Topology: N-terminal domain of TfIIb
Homology: N-terminal domain of TfIIb
Occurring in:
  1. Large ribosomal subunit protein eL37
  2. Large ribosomal subunit protein eL43
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 2.20.25.30 (N-terminal domain of TfIIb) in Large ribosomal subunit protein eL43. Showing 1 copy in chain AA [auth Z].
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 2.20.25.30 (N-terminal domain of TfIIb) in Large ribosomal subunit protein eL37. Showing 1 copy in chain BA [auth 1].
3.10.440.10
Class: Alpha Beta
Architecture: Roll
Topology: Ribosomal Protein L31e; Chain: W;
Homology: Ribosomal Protein L31e; Chain: W;
Occurring in:
  1. Large ribosomal subunit protein eL31
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.10.440.10 (Ribosomal Protein L31e; Chain: W;) in Large ribosomal subunit protein eL31. Showing 1 copy in chain Y [auth X].
1.10.15.30
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: 3-methyladenine DNA Glycosylase II; Chain A, domain 3
Homology: 3-methyladenine DNA Glycosylase II; Chain A, domain 3
Occurring in:
  1. Large ribosomal subunit protein uL30
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 1.10.15.30 (3-methyladenine DNA Glycosylase II; Chain A, domain 3) in Large ribosomal subunit protein uL30. Showing 1 copy in chain X [auth W].
1.10.287.310
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Helix Hairpins
Homology: Helix Hairpins
Occurring in:
  1. Large ribosomal subunit protein uL29
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 1.10.287.310 (Helix Hairpins) in Large ribosomal subunit protein uL29. Showing 1 copy in chain W [auth V].
2.30.170.20
Class: Mainly Beta
Architecture: Roll
Topology: Ribosomal Protein L24e; Chain: T;
Homology: Ribosomal protein L24e
Occurring in:
  1. Large ribosomal subunit protein eL24
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 2.30.170.20 (Ribosomal Protein L24e; Chain: T;) in Large ribosomal subunit protein eL24. Showing 1 copy in chain V [auth U].
3.30.70.330
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Alpha-Beta Plaits
Homology: Alpha-Beta Plaits
Occurring in:
  1. Large ribosomal subunit protein uL23
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.30.70.330 (Alpha-Beta Plaits) in Large ribosomal subunit protein uL23. Showing 1 copy in chain T [auth S].
3.90.470.10
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: Ribosomal Protein L22; Chain A
Homology: Ribosomal protein L22/L17
Occurring in:
  1. Large ribosomal subunit protein uL22
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.90.470.10 (Ribosomal Protein L22; Chain A) in Large ribosomal subunit protein uL22. Showing 1 copy in chain S [auth R].
2.30.30.70
Class: Mainly Beta
Architecture: Roll
Topology: SH3 type barrels.
Homology: Ribosomal protein L21
Occurring in:
  1. Large ribosomal subunit protein eL21
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 2.30.30.70 (SH3 type barrels.) in Large ribosomal subunit protein eL21. Showing 1 copy in chain R [auth Q].
1.10.1200.60
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Homology: Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Occurring in:
  1. Large ribosomal subunit protein eL19
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 1.10.1200.60 (Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A) in Large ribosomal subunit protein eL19. Showing 1 copy in chain Q [auth P].
1.20.5.560
Class: Mainly Alpha
Architecture: Up-down Bundle
Topology: Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homology: Single Heli x bin
Occurring in:
  1. Large ribosomal subunit protein eL19
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 1.20.5.560 (Single alpha-helices involved in coiled-coils or other helix-helix interfaces) in Large ribosomal subunit protein eL19. Showing 1 copy in chain Q [auth P].
1.10.1650.10
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: 50s Ribosomal Protein L19e, Chain O, domain 1
Homology: 50s Ribosomal Protein L19e, Chain O, domain 1
Occurring in:
  1. Large ribosomal subunit protein eL19
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 1.10.1650.10 (50s Ribosomal Protein L19e, Chain O, domain 1) in Large ribosomal subunit protein eL19. Showing 1 copy in chain Q [auth P].
3.30.420.100
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Nucleotidyltransferase; domain 5
Homology: Nucleotidyltransferase; domain 5
Occurring in:
  1. Large ribosomal subunit protein uL18
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.30.420.100 (Nucleotidyltransferase; domain 5) in Large ribosomal subunit protein uL18. Showing 1 copy in chain O [auth N].
3.40.1120.10
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: Ribosomal protein L15e
Homology: Ribosomal protein l15e
Occurring in:
  1. Large ribosomal subunit protein eL15
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.40.1120.10 (Ribosomal protein L15e) in Large ribosomal subunit protein eL15. Showing 1 copy in chain N [auth M].
4.10.990.10
Class: Few Secondary Structures
Architecture: Irregular
Topology: Molecule: Ribosomal Protein L15; Chain: K; domain 1
Homology: Molecule: Ribosomal Protein L15; Chain: K; domain 1
Occurring in:
  1. Large ribosomal subunit protein uL15
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 4.10.990.10 (Molecule: Ribosomal Protein L15; Chain: K; domain 1) in Large ribosomal subunit protein uL15. Showing 1 copy in chain M [auth L].
2.40.150.20
Class: Mainly Beta
Architecture: Beta Barrel
Topology: Ribosomal Protein L14
Homology: Ribosomal protein L14
Occurring in:
  1. Large ribosomal subunit protein uL14
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 2.40.150.20 (Ribosomal Protein L14) in Large ribosomal subunit protein uL14. Showing 1 copy in chain L [auth K].
3.90.1180.10
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: Ribosomal Protein L13p; Chain: A;
Homology: Ribosomal protein L13
Occurring in:
  1. Large ribosomal subunit protein uL13
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.90.1180.10 (Ribosomal Protein L13p; Chain: A;) in Large ribosomal subunit protein uL13. Showing 1 copy in chain K [auth J].
1.10.10.250
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Arc Repressor Mutant, subunit A
Homology: Ribosomal protein L11, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 1.10.10.250 (Arc Repressor Mutant, subunit A) in Large ribosomal subunit protein uL11. Showing 1 copy in chain EA [auth I].
3.90.1170.10
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: Aldehyde Oxidoreductase; domain 3
Homology: Ribosomal protein L10e/L16
Occurring in:
  1. Large ribosomal subunit protein uL16
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.90.1170.10 (Aldehyde Oxidoreductase; domain 3) in Large ribosomal subunit protein uL16. Showing 1 copy in chain J [auth H].
3.30.1330.30
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: 60s Ribosomal Protein L30; Chain: A;
Homology: 60s Ribosomal Protein L30; Chain: A;
Occurring in:
  1. Large ribosomal subunit protein eL8
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.30.1330.30 (60s Ribosomal Protein L30; Chain: A;) in Large ribosomal subunit protein eL8. Showing 1 copy in chain H [auth F].
3.30.1440.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: 50s Ribosomal Protein L5; Chain: A,
Homology: 50s Ribosomal Protein L5; Chain: A,
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.30.1440.10 (50s Ribosomal Protein L5; Chain: A,) in Large ribosomal subunit protein uL5. Showing 1 copy in chain F [auth D].
3.40.1370.10
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: Ribosomal Protein L4; Chain: A;
Homology: Ribosomal Protein L4; Chain: A;
Occurring in:
  1. Large ribosomal subunit protein uL4
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.40.1370.10 (Ribosomal Protein L4; Chain: A;) in Large ribosomal subunit protein uL4. Showing 1 copy in chain E [auth C].
3.30.1430.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Ribosomal Protein L3; Chain: B; domain 2,
Homology: Ribosomal Protein L3; Chain: B; domain 2,
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.30.1430.10 (Ribosomal Protein L3; Chain: B; domain 2,) in Large ribosomal subunit protein uL3. Showing 1 copy in chain D [auth B].
4.10.950.10
Class: Few Secondary Structures
Architecture: Irregular
Topology: Ribosomal protein L2; domain 3
Homology: Ribosomal protein L2, domain 3
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 4.10.950.10 (Ribosomal protein L2; domain 3) in Large ribosomal subunit protein uL2. Showing 1 copy in chain C [auth A].
2.40.50.140
Class: Mainly Beta
Architecture: Beta Barrel
Topology: OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homology: Nucleic acid-binding proteins
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 2.40.50.140 (OB fold (Dihydrolipoamide Acetyltransferase, E2P)) in Large ribosomal subunit protein uL2. Showing 1 copy in chain C [auth A].
3.10.450.80
Class: Alpha Beta
Architecture: Roll
Topology: Nuclear Transport Factor 2; Chain: A,
Homology: Nuclear Transport Factor 2; Chain: A,
Occurring in:
  1. Large ribosomal subunit protein eL42
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 3.10.450.80 (Nuclear Transport Factor 2; Chain: A,) in Large ribosomal subunit protein eL42. Showing 1 copy in chain DA [auth 3].
1.10.1620.10
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Atp Synthase Epsilon Chain; Chain: I;
Homology: Ribosomal protein L39e
Occurring in:
  1. Large ribosomal subunit protein eL39
The deposited structure of PDB entry 2otj contains 1 copy of CATH domain 1.10.1620.10 (Atp Synthase Epsilon Chain; Chain: I;) in Large ribosomal subunit protein eL39. Showing 1 copy in chain CA [auth 2].
SCOP SCOP annotations
50105
Class: All beta proteins
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Occurring in:
  1. Large ribosomal subunit protein eL21
  2. Large ribosomal subunit protein uL24
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 50105 (Ribosomal proteins L24p and L21e) in Large ribosomal subunit protein eL21. Showing 1 copy in chain R [auth Q].
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 50105 (Ribosomal proteins L24p and L21e) in Large ribosomal subunit protein uL24. Showing 1 copy in chain U [auth T].
52081
Class: Alpha and beta proteins (a/b)
Fold: Ribosomal proteins L15p and L18e
Superfamily: Ribosomal proteins L15p and L18e
Occurring in:
  1. Large ribosomal subunit protein uL15
  2. Large ribosomal subunit protein eL18
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 52081 (Ribosomal proteins L15p and L18e) in Large ribosomal subunit protein uL15. Showing 1 copy in chain M [auth L].
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 52081 (Ribosomal proteins L15p and L18e) in Large ribosomal subunit protein eL18. Showing 1 copy in chain P [auth O].
56054
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal protein L6
Superfamily: Ribosomal protein L6
Occurring in:
  1. Large ribosomal subunit protein uL6
The deposited structure of PDB entry 2otj contains 2 copies of SCOP domain 56054 (Ribosomal protein L6) in Large ribosomal subunit protein uL6. Showing 2 copies in chain G [auth E].
57830
Class: Small proteins
Fold: Rubredoxin-like
Superfamily: Zn-binding ribosomal proteins
Occurring in:
  1. Large ribosomal subunit protein eL43
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 57830 (Ribosomal protein L37ae) in Large ribosomal subunit protein eL43. Showing 1 copy in chain AA [auth Z].
52043
Class: Alpha and beta proteins (a/b)
Fold: Barstar-like
Superfamily: Ribosomal protein L32e
Occurring in:
  1. Large ribosomal subunit protein eL32
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 52043 (Ribosomal protein L32e) in Large ribosomal subunit protein eL32. Showing 1 copy in chain Z [auth Y].
54576
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal protein L31e
Superfamily: Ribosomal protein L31e
Occurring in:
  1. Large ribosomal subunit protein eL31
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 54576 (Ribosomal protein L31e) in Large ribosomal subunit protein eL31. Showing 1 copy in chain Y [auth X].
55130
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal protein L30p/L7e
Superfamily: Ribosomal protein L30p/L7e
Occurring in:
  1. Large ribosomal subunit protein uL30
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 55130 (Ribosomal protein L30p/L7e) in Large ribosomal subunit protein uL30. Showing 1 copy in chain X [auth W].
46562
Class: All alpha proteins
Fold: Long alpha-hairpin
Superfamily: Ribosomal protein L29 (L29p)
Occurring in:
  1. Large ribosomal subunit protein uL29
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 46562 (Ribosomal protein L29 (L29p)) in Large ribosomal subunit protein uL29. Showing 1 copy in chain W [auth V].
57749
Class: Small proteins
Fold: Glucocorticoid receptor-like (DNA-binding domain)
Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
Occurring in:
  1. Large ribosomal subunit protein eL24
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 57749 (Ribosomal protein L24e) in Large ribosomal subunit protein eL24. Showing 1 copy in chain V [auth U].
54190
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal proteins S24e, L23 and L15e
Superfamily: Ribosomal proteins S24e, L23 and L15e
Occurring in:
  1. Large ribosomal subunit protein uL23
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 54190 (L23p) in Large ribosomal subunit protein uL23. Showing 1 copy in chain T [auth S].
54844
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal protein L22
Superfamily: Ribosomal protein L22
Occurring in:
  1. Large ribosomal subunit protein uL22
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 54844 (Ribosomal protein L22) in Large ribosomal subunit protein uL22. Showing 1 copy in chain S [auth R].
48141
Class: All alpha proteins
Fold: Ribosomal protein L19 (L19e)
Superfamily: Ribosomal protein L19 (L19e)
Occurring in:
  1. Large ribosomal subunit protein eL19
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 48141 (Ribosomal protein L19 (L19e)) in Large ribosomal subunit protein eL19. Showing 1 copy in chain Q [auth P].
53138
Class: Alpha and beta proteins (a/b)
Fold: Ribonuclease H-like motif
Superfamily: Translational machinery components
Occurring in:
  1. Large ribosomal subunit protein uL18
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 53138 (Ribosomal protein L18 and S11) in Large ribosomal subunit protein uL18. Showing 1 copy in chain O [auth N].
54193
Class: Alpha and beta proteins (a+b)
Fold: Ribosomal proteins S24e, L23 and L15e
Superfamily: Ribosomal proteins S24e, L23 and L15e
Occurring in:
  1. Large ribosomal subunit protein eL15
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 54193 (L15e) in Large ribosomal subunit protein eL15. Showing 1 copy in chain N [auth M].
50194
Class: All beta proteins
Fold: Ribosomal protein L14
Superfamily: Ribosomal protein L14
Occurring in:
  1. Large ribosomal subunit protein uL14
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 50194 (Ribosomal protein L14) in Large ribosomal subunit protein uL14. Showing 1 copy in chain L [auth K].
52162
Class: Alpha and beta proteins (a/b)
Fold: Ribosomal protein L13
Superfamily: Ribosomal protein L13
Occurring in:
  1. Large ribosomal subunit protein uL13
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 52162 (Ribosomal protein L13) in Large ribosomal subunit protein uL13. Showing 1 copy in chain K [auth J].
46907
Class: All alpha proteins
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Ribosomal protein L11, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 46907 (Ribosomal protein L11, C-terminal domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain EA [auth I].
54687
Class: Alpha and beta proteins (a+b)
Fold: alpha/beta-Hammerhead
Superfamily: Ribosomal protein L16p/L10e
Occurring in:
  1. Large ribosomal subunit protein uL16
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 54687 (Ribosomal protein L10e) in Large ribosomal subunit protein uL16. Showing 1 copy in chain J [auth H].
64660
Class: Peptides
Fold: Ribosomal protein L10
Superfamily: Ribosomal protein L10
Occurring in:
  1. Large ribosomal subunit protein uL10
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 64660 (Ribosomal protein L10) in Large ribosomal subunit protein uL10. Showing 1 copy in chain I [auth G].
55316
Class: Alpha and beta proteins (a+b)
Fold: Bacillus chorismate mutase-like
Superfamily: L30e-like
Occurring in:
  1. Large ribosomal subunit protein eL8
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 55316 (L30e/L7ae ribosomal proteins) in Large ribosomal subunit protein eL8. Showing 1 copy in chain H [auth F].
55283
Class: Alpha and beta proteins (a+b)
Fold: RL5-like
Superfamily: RL5-like
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 55283 (Ribosomal protein L5) in Large ribosomal subunit protein uL5. Showing 1 copy in chain F [auth D].
52167
Class: Alpha and beta proteins (a/b)
Fold: Ribosomal protein L4
Superfamily: Ribosomal protein L4
Occurring in:
  1. Large ribosomal subunit protein uL4
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 52167 (Ribosomal protein L4) in Large ribosomal subunit protein uL4. Showing 1 copy in chain E [auth C].
50461
Class: All beta proteins
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Translation proteins
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 50461 (Ribosomal protein L3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain D [auth B].
50114
Class: All beta proteins
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 50114 (C-terminal domain of ribosomal protein L2) in Large ribosomal subunit protein uL2. Showing 1 copy in chain C [auth A].
50282
Class: All beta proteins
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 50282 (Cold shock DNA-binding domain-like) in Large ribosomal subunit protein uL2. Showing 1 copy in chain C [auth A].
57836
Class: Small proteins
Fold: Rubredoxin-like
Superfamily: Zn-binding ribosomal proteins
Occurring in:
  1. Large ribosomal subunit protein eL42
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 57836 (Ribosomal protein L44e) in Large ribosomal subunit protein eL42. Showing 1 copy in chain DA [auth 3].
48663
Class: All alpha proteins
Fold: Non-globular all-alpha subunits of globular proteins
Superfamily: Ribosomal protein L39e
Occurring in:
  1. Large ribosomal subunit protein eL39
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 48663 (Ribosomal protein L39e) in Large ribosomal subunit protein eL39. Showing 1 copy in chain CA [auth 2].
57833
Class: Small proteins
Fold: Rubredoxin-like
Superfamily: Zn-binding ribosomal proteins
Occurring in:
  1. Large ribosomal subunit protein eL37
The deposited structure of PDB entry 2otj contains 1 copy of SCOP domain 57833 (Ribosomal protein L37e) in Large ribosomal subunit protein eL37. Showing 1 copy in chain BA [auth 1].

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