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The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080

Source organism: Deinococcus radiodurans
Biochemical function: rRNA binding
Biological process: translation
Cellular component: ribonucleoprotein complex

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GO terms

Sequence families

Pfam Protein family (Pfam)
PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 2ogn contains 1 copy of Pfam domain PF00297 (Ribosomal protein L3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain B.

Rfam RNA family (Rfam)
RF02541
Domain description: Bacterial large subunit ribosomal RNA
Occurring in:
  1. 23S ribosomal RNA
The deposited structure of PDB entry 2ogn contains 1 copy of Rfam domain RF02541 (Bacterial large subunit ribosomal RNA) in 23S ribosomal RNA. Showing 1 copy in chain A [auth 0].

InterPro InterPro annotations
IPR019927
Domain description: Large ribosomal subunit protein uL3, bacterial/organelle-type
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR019926
Domain description: Large ribosomal subunit protein uL3, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR000597
Domain description: Large ribosomal subunit protein uL3
Occurring in:
  1. Large ribosomal subunit protein uL3
IPR009000
Domain description: Translation protein, beta-barrel domain superfamily
Occurring in:
  1. Large ribosomal subunit protein uL3

Structure domain

SCOP SCOP annotation
50461
Class: All beta proteins
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Translation proteins
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 2ogn contains 1 copy of SCOP domain 50461 (Ribosomal protein L3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain B.

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